Gene Information

Name : KOX_21300 (KOX_21300)
Accession : YP_005020219.1
Strain : Klebsiella oxytoca KCTC 1686
Genome accession: NC_016612
Putative virulence/resistance : Resistance
Product : DNA-binding transcriptional activator MarA
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4599329 - 4599709 bp
Length : 381 bp
Strand : +
Note : COG2207 AraC-type DNA-binding domain-containing proteins

DNA sequence :
ATGTCCAGACGCAATAACGACGCCATCACTATCCATAGTATTTTGTCGTGGATCGAGGATAACCTGGAATCGCCCCTGTC
GCTGGAGAAGGTTTCAGAGCGCTCAGGTTACTCCAAGTGGCACCTGCAAAGAATGTTCAAGAAAGAGACCGGTCACTCGC
TGGGACAGTATATCCGCAGCCGTAAGCTGACCGAGATCGCGCAGAAGCTGAAGCAGAGCAACGAGCCTATCTTATACCTG
GCCGAACGCTATGGTTTTGAATCGCAGCAAACGCTGACGCGAACTTTTAAGAACTATTTCGATGTTCCGCCGCACCAGTA
TCGTATTACCAACGTGCCGGGCGAGTCGCGCTACCTGCTCCCATTAAATAACTGTTGTTAA

Protein sequence :
MSRRNNDAITIHSILSWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKLTEIAQKLKQSNEPILYL
AERYGFESQQTLTRTFKNYFDVPPHQYRITNVPGESRYLLPLNNCC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 2e-21 47
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 2e-21 47
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-19 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP000647.1.gene1624. Protein 2e-53 99
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP001918.1.gene2033. Protein 4e-53 93
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP001138.1.gene1637. Protein 4e-52 93
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA BAC0560 Protein 2e-51 91
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA NC_002695.1.917339.p Protein 2e-51 91
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP000034.1.gene1596. Protein 3e-51 90
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA NC_010558.1.6276025. Protein 1e-21 47
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP001138.1.gene612.p Protein 4e-22 46
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA BAC0371 Protein 6e-20 43
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP000034.1.gene4505. Protein 1e-19 43
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA NC_002695.1.914293.p Protein 6e-20 43
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP001138.1.gene4488. Protein 5e-20 43
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP001918.1.gene327.p Protein 4e-20 43
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA CP000647.1.gene4499. Protein 8e-20 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA VFG1038 Protein 1e-21 47
KOX_21300 YP_005020219.1 DNA-binding transcriptional activator MarA VFG0585 Protein 5e-20 43