Gene Information

Name : KOX_09580 (KOX_09580)
Accession : YP_005017881.1
Strain : Klebsiella oxytoca KCTC 1686
Genome accession: NC_016612
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2044961 - 2045437 bp
Length : 477 bp
Strand : +
Note : COG2003 DNA repair proteins

DNA sequence : 
ATGACTTTCAACTTATTACTACCGCAGGAACTACCGCTGACAACCCGGCGAACTGTTCAGCGTGCTCTGTCGCTGCTTGA
ACACTATCTGCGCGAGCCTGGCGCTTCATTCACGTCCACAACGGTTGTCCGGGACTGGCTACGTCTGAAAATGACCGGGC
TGGAGCGCGAAATGTTTCTGGTACTGTACCTTAACCAGCAAAACCAGCTAATTACTCACGAAACCCTGTTTACCGGGACT
ATTAATAGTACGGAAGTGCATCCTCGCGAAGTGGTGAAATCAGCCCTGCGCCATAATGCAGCCGCCGTGCTTTTTGCCCA
CAACCATCCCTCTGGTGAAGCTGAGCCCAGCCAGGCCGATAGGCGGATTACCGCCAGACTGGTAAAGGCGCTGTCTCTGG
TAGAAATTCGGGTGCTGGATCACTGCATAGTCGGAGGCATGACAGTGGTTTCATTTGCCGAACGTGGCTGGTTATGA

Protein sequence : 
MTFNLLLPQELPLTTRRTVQRALSLLEHYLREPGASFTSTTVVRDWLRLKMTGLEREMFLVLYLNQQNQLITHETLFTGT
INSTEVHPREVVKSALRHNAAAVLFAHNHPSGEAEPSQADRRITARLVKALSLVEIRVLDHCIVGGMTVVSFAERGWL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK00479.1 unknown Not tested SHI-1 Protein 5e-39 69
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 7e-41 67
z1217 CAD33787.1 Z1217 protein Not tested PAI I 536 Protein 2e-40 67
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 1e-40 67
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 3e-41 67
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 1e-40 67
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 4e-41 67
Z1217 NP_286752.1 RadC family DNA repair protein Not tested TAI Protein 4e-40 67
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 1e-40 67
unnamed AAL67345.1 intergenic-region protein Not tested PAI II CFT073 Protein 2e-40 67
yeeS CAI43901.1 YeeS protein Not tested LEE Protein 2e-40 67
yeeS CAI43846.1 YeeS protein Not tested LEE Protein 2e-40 67
yeeS ADD91702.1 YeeS Not tested PAI-I AL862 Protein 2e-40 67
yeeS CAE85201.1 YeeS protein Not tested PAI V 536 Protein 2e-40 67
yeeS NP_838484.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-40 67
yeeS NP_708770.1 RADC family DNA repair protein Not tested SHI-1 Protein 3e-40 67
aec73 AAW51756.1 Aec73 Not tested AGI-3 Protein 2e-40 66
unnamed AAL08475.1 unknown Not tested SRL Protein 3e-40 66
Z1657 NP_287160.1 RadC family DNA repair protein Not tested TAI Protein 7e-39 65
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-33 57
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 7e-33 57
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 3e-33 57
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 2e-30 55
radC AAN62140.1 putative DNA repair protein RadC Not tested PAGI-2(C) Protein 2e-26 49
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 3e-23 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KOX_09580 YP_005017881.1 DNA repair protein RadC VFG1678 Protein 1e-41 67
KOX_09580 YP_005017881.1 DNA repair protein RadC VFG1528 Protein 9e-41 67
KOX_09580 YP_005017881.1 DNA repair protein RadC VFG1617 Protein 5e-41 67
KOX_09580 YP_005017881.1 DNA repair protein RadC VFG0660 Protein 9e-41 67
KOX_09580 YP_005017881.1 DNA repair protein RadC VFG1066 Protein 1e-40 66
KOX_09580 YP_005017881.1 DNA repair protein RadC VFG1119 Protein 2e-33 57