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Name : lysS (BFO_3356) Accession : YP_005015975.1 Strain : Tannerella forsythia ATCC 43037 Genome accession: NC_016610 Putative virulence/resistance : Virulence Product : lysine--tRNA ligase Function : - COG functional category : - COG ID : - EC number : - Position : 3396445 - 3398277 bp Length : 1833 bp Strand : + Note : identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499 DNA sequence : ATGGCATGTTTTTCGGAAGTCAAAAATAAGGAAATCCGTGAGCTATCCGAATATTTTTTGTATTTTTGCACGATTATTAC CATTTTTGACCAAGTAATGAACGTATTAGATTTAAGCGAACAGGAAATCGTCCGGCGCGGCAGTCTCGAACAGTTACGCA AGATGAACATTGACCCGTACCCGGCTGCCGCATATCCGGTCAACGGATATGCCGAAGAAATAAAGGCGAACTTCAACGAC GATGCCCAACCGCGGCAGGTAACGATTGCCGGACGTATCATGAGCCGTCGTATCATGGGCAAAGCATCTTTTATGGAATT GCAGGATTCGACCGGACGCATTCAAGTATATATCACCCGCGAGGATCTCTGTCCGGACGAAAATAACACGGAACAATACA ATACCGTGTTCAAAAAGCTGCTCGACATCGGCGATTTTGTCGGTATCAAAGGATTCGTCTTTCGTACGCAGATGGGTGAA ATATCCGTTCATGCACAAGAACTGACGGTACTCTCGAAGTCGTTACGTCCGTTACCTATAGTCAAAGAAAAAGACGGTGT GGTCTACGACGGTTTCAATGATCCGGAGTTGCGTTACCGGCAGCGCTATGTCGACCTGATTGTCAATAACGACGTGAAAA ATATTTTCTTCAAGCGCAACCAAATCTACACTTCGATGCGTGAATATTTCAATGCCAGAGGCTACATAGAGGTGGAGACG CCGATTCTGCAATCTATTCCGGGAGGAGCGGCGGCGCGTCCGTTTATCACACATCACAATGCCCTCGACATCAATCTGTA TCTTCGCATTGCCAACGAGTTATACTTGAAGCGTCTGATTGTCGGTGGCTTTGAGGGCGTTTACGAGTTTTCGAAAAACT TCCGTAATGAAGGCATGGACCGTACGCATAATCCCGAATTTACCTGCATGGAGATTTATGTAGCATACAAGGACTATCAT TGGATGATGGAGTTTACCGAACAGATGCTTGAAAAGATTTGCCTCGACGTGAACGGCACGAAGGAAATAACGGTTGGCGA TAAGACCATTCGTTTTAAAGCTCCGTTCAGACGCGTGACCATGATTGAGGCCATCCATGAACATACGGGGATCGACATTA CGGGAATGAATGAAGCGCAGTTGCGCGAAATGTGTAAACAACTCAACATCGAGATCGATGAGACGATGGGTAAAGGTAAA CTGATCGACGAAATCTTCGGCGAAAAGTGTGAAGGGAACTATATCCAACCCACGTTTATCACCGACTATCCGATCGAGAT GTCGCCCCTCTGCAAACGTCACCGGAACAATCCCGATTTAACCGAACGTTTCGAACTGATCGTCAACGGGAAGGAACTTT GCAATGCGTATTCGGAATTGAACGACCCGATCGACCAGTTGGAGCGTTTTCAGGAACAGTTACGCCTGAGCGAAAAAGGA GATGATGAGGCCATGTTCATCGATATGGACTTTGTGCGTGCACTCGAATACGGCATGCCTCCGACGAGTGGCATGGGAAT TGGTATCGACCGGCTGGTGATGTTGATGACCGGGCAGACGACGATTCAGGAAGTGCTGTTCTTCCCCCAAATGCGTCCGG AGAAGACCGTGAAGAAAGACGCGCCCGAAAAATATGCTCTGCTAGGAATACCGGCCGAATGGGTGCCGGCCATACAGAAA GCAGGCTTTGTAACGGTCGAGATGCTGGATGGTGCCAACCCGCAATTGTTGAGACAATTGCTTTTCGAGTTGAACAAGAA ATACCATCTCGGTCTGGAACTACCTGCGTTACAAACGGTCGAAGCATGGATTCAATCTGTTACGGGGCATTAA Protein sequence : MACFSEVKNKEIRELSEYFLYFCTIITIFDQVMNVLDLSEQEIVRRGSLEQLRKMNIDPYPAAAYPVNGYAEEIKANFND DAQPRQVTIAGRIMSRRIMGKASFMELQDSTGRIQVYITREDLCPDENNTEQYNTVFKKLLDIGDFVGIKGFVFRTQMGE ISVHAQELTVLSKSLRPLPIVKEKDGVVYDGFNDPELRYRQRYVDLIVNNDVKNIFFKRNQIYTSMREYFNARGYIEVET PILQSIPGGAAARPFITHHNALDINLYLRIANELYLKRLIVGGFEGVYEFSKNFRNEGMDRTHNPEFTCMEIYVAYKDYH WMMEFTEQMLEKICLDVNGTKEITVGDKTIRFKAPFRRVTMIEAIHEHTGIDITGMNEAQLREMCKQLNIEIDETMGKGK LIDEIFGEKCEGNYIQPTFITDYPIEMSPLCKRHRNNPDLTERFELIVNGKELCNAYSELNDPIDQLERFQEQLRLSEKG DDEAMFIDMDFVRALEYGMPPTSGMGIGIDRLVMLMTGQTTIQEVLFFPQMRPEKTVKKDAPEKYALLGIPAEWVPAIQK AGFVTVEMLDGANPQLLRQLLFELNKKYHLGLELPALQTVEAWIQSVTGH |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-105 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005015975.1 | lysine--tRNA ligase | VFG1668 | Protein | 4e-105 | 48 |
