|
Name : Niako_0890 (Niako_0890) Accession : YP_005006673.1 Strain : Niastella koreensis GR20-10 Genome accession: NC_016609 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : - COG ID : - EC number : - Position : 1093648 - 1094085 bp Length : 438 bp Strand : - Note : PFAM: SmpB protein; TIGRFAM: SsrA-binding protein; COGs: COG0691 tmRNA-binding protein; HAMAP: SsrA-binding protein; InterPro IPR000037; KEGG: cpi:Cpin_3663 SsrA-binding protein; PFAM: SsrA-binding protein; SPTR: SsrA-binding protein; TIGRFAM: SsrA-bindin DNA sequence : ATGGCAGATATCAGGAACCGCTCGGCTTACCACGATTATTTCATCGAAGATAAATACGATGCGGGTATGGTATTGGTGGG ATCGGAAGTGAAATCGCTGCGCGCCGGACGCGCCAGCTTCAACGACAGCTACTGTTTTTTTCACAGGGGCGAATTGTGGG TCAAAAGCTTTCACATTGCCCAGTACTCTCACAGCTCACTCTACATCCATGACCCGGTTCGGGAACGCAAATTGCTGTTA AACAGAAAGGAGTTGCGGAAACTGGAGGCCAAGATGAAAGAAAGAGGTTACTCCATCATTCCATTACGGATTTTCTTTAA CGAGCGGGGATTTGTGAAAATGGAAATTGGCCTGGCTAAGGGTAAAAAGAATTACGATAAGCGGGAGACTATCAAGCAGC GGGATAATGATCGGGAGCTTAAACGGTATATTAAGTAA Protein sequence : MADIRNRSAYHDYFIEDKYDAGMVLVGSEVKSLRAGRASFNDSYCFFHRGELWVKSFHIAQYSHSSLYIHDPVRERKLLL NRKELRKLEAKMKERGYSIIPLRIFFNERGFVKMEIGLAKGKKNYDKRETIKQRDNDRELKRYIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 6e-23 | 46 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 4e-20 | 45 |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-15 | 42 |
