Gene Information

Name : Niako_7236 (Niako_7236)
Accession : YP_005012855.1
Strain : Niastella koreensis GR20-10
Genome accession: NC_016609
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 8849663 - 8850358 bp
Length : 696 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: dfe:Dfer_2762

DNA sequence : 
ATGGAAGAAACGAAAATACTGGTTGTTGAAGACGAACAAAAAATTGCCGACACCCTGAACGTGGGCCTTAGTGAAAATGG
TTATCACGTGGAGGTGGCATATGATGGTAAAATCGGGGAGCGGTTATTTTTTATGCATGATTTTAACCTGGTGATCCTTG
ACATCAACCTGCCGGGGATAAATGGGTATGAGCTGGCCAGGATCATCCGGGCGCGTAATACGCACATCCCCATAATTATG
CTTACCTCCTTAAGCACCCTGAATGACAAGATAGAAGGCTACGATGCCGGCACCGACGATTACATAGTAAAGCCCTTTGA
GTTTAAGGAACTGCTGGTGAAAATAAGGGTACTGCTGAAACGCACCATGAACCAGAACGTGCCGGTAGGTAATATCTTAA
AAGCGGCCGATCTTAGTATGAACCTTGACAGTAAGGAAGTGCGGCGGGGTAACGATGTCATTAACCTTACCGCCAAAGAG
TTTCAATTGCTGGAGTACCTGCTTCAGAACAAGAACAAGGTAGTGTCAAGAGCGTCTATTGCGGTAAATGTGTGGGACAT
TGATTTTGACACCAACACCAATATTATTGACGTATACATCAGTTATCTTCGCAATAAAATAGATAAGCCGTACGAACGAA
AGCTGATACAAACACACGTTGGCATGGGGTATATTTTAAAGGAAAACGAACGCTGA

Protein sequence : 
MEETKILVVEDEQKIADTLNVGLSENGYHVEVAYDGKIGERLFFMHDFNLVILDINLPGINGYELARIIRARNTHIPIIM
LTSLSTLNDKIEGYDAGTDDYIVKPFEFKELLVKIRVLLKRTMNQNVPVGNILKAADLSMNLDSKEVRRGNDVINLTAKE
FQLLEYLLQNKNKVVSRASIAVNVWDIDFDTNTNIIDVYISYLRNKIDKPYERKLIQTHVGMGYILKENER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-38 43
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-38 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family BAC0111 Protein 3e-42 45
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family NC_002952.2859858.p0 Protein 1e-34 43
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family NC_007622.3794948.p0 Protein 1e-34 43
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family NC_003923.1003417.p0 Protein 1e-34 43
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family NC_013450.8614146.p0 Protein 1e-34 43
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family NC_002951.3238224.p0 Protein 1e-34 43
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family NC_007793.3914065.p0 Protein 1e-34 43
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family NC_002758.1121390.p0 Protein 1e-34 43
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family NC_010079.5776364.p0 Protein 1e-34 43
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family BAC0347 Protein 1e-38 42
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family BAC0197 Protein 7e-36 42
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family BAC0125 Protein 1e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Niako_7236 YP_005012855.1 two component transcriptional regulator, winged helix family VFG0596 Protein 2e-38 43