Gene Information

Name : Niako_1860 (Niako_1860)
Accession : YP_005007622.1
Strain : Niastella koreensis GR20-10
Genome accession: NC_016609
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2272222 - 2272974 bp
Length : 753 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867; KEGG: cao:Celal_4141

DNA sequence : 
ATGATTCCAGGGTTTTATTTTGCAACTTTGTTCCATCATAGTATGGATAATAAAACAGTACTGATCATCGAAGATGATCC
CAATATAGTAGAGCTGCTGCGTATTCACCTGTACGATTTGGGTTGTAAGGTGGCTTCGGAGGGCGATGGCCTGAAAGGAC
TGGCATCGGCAAAGGAAGGCCATTTTCACCTGATAATACTTGATATTACTTTACCGGGATTGAATGGCATGGAGGTTTGC
CGCAAATTGCGACAAACGGACCGGCAAACGCCTATCCTGATGCTTACCGCCAGAAGCGAAGAGATAGATAAAGTGATGGG
GCTGGAAACCGGCGCCGATGATTACCTTACCAAACCCTTCAGCATCCGCGAATTTATTGCCCGGGTAAAAGTCATCTTCC
GCCGTACTGAAGAGTTTGCCGCCGAAGCCAGTCCGGCAGCAGCCTCTTCGGTATTAAACTTAAGCGGACTGGAAATAGAC
CTTGACAAACGGAGGGTAACGCTTCATAACAACCGGGTAGACCTTTCTCCAAAAGAATTTGAACTCATCACGCTGCTGGC
ATCGAACCCCGGCAAAAGCTATAGCCGTAAGCGCTTGCTGAACCTGGTATGGGGCTACGATTTTGAAGGCTATGAACACA
CGGTGAACAGCCATATCAATCGCCTGCGCGCCAAGATCGAAGAAGATGTATCGAACCCTAAATTTATTTTAACCACCTGG
GGCGTAGGCTACAGGTTTAACGAGGAGTTATAA

Protein sequence : 
MIPGFYFATLFHHSMDNKTVLIIEDDPNIVELLRIHLYDLGCKVASEGDGLKGLASAKEGHFHLIILDITLPGLNGMEVC
RKLRQTDRQTPILMLTARSEEIDKVMGLETGADDYLTKPFSIREFIARVKVIFRRTEEFAAEASPAAASSVLNLSGLEID
LDKRRVTLHNNRVDLSPKEFELITLLASNPGKSYSRKRLLNLVWGYDFEGYEHTVNSHINRLRAKIEEDVSNPKFILTTW
GVGYRFNEEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-47 48
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 8e-47 48
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Niako_1860 YP_005007622.1 two component transcriptional regulator, winged helix family NC_012469.1.7686381. Protein 3e-42 44
Niako_1860 YP_005007622.1 two component transcriptional regulator, winged helix family HE999704.1.gene2815. Protein 2e-42 44
Niako_1860 YP_005007622.1 two component transcriptional regulator, winged helix family AF155139.2.orf0.gene Protein 2e-39 42
Niako_1860 YP_005007622.1 two component transcriptional regulator, winged helix family AE016830.1.gene1681. Protein 2e-44 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Niako_1860 YP_005007622.1 two component transcriptional regulator, winged helix family VFG1563 Protein 4e-47 48
Niako_1860 YP_005007622.1 two component transcriptional regulator, winged helix family VFG1702 Protein 4e-47 48
Niako_1860 YP_005007622.1 two component transcriptional regulator, winged helix family VFG0596 Protein 2e-33 41
Niako_1860 YP_005007622.1 two component transcriptional regulator, winged helix family VFG1389 Protein 3e-32 41