Gene Information

Name : PECL_1544 (PECL_1544)
Accession : YP_005005438.1
Strain : Pediococcus claussenii ATCC BAA-344
Genome accession: NC_016605
Putative virulence/resistance : Virulence
Product : AAA ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1491835 - 1493958 bp
Length : 2124 bp
Strand : -
Note : -

DNA sequence :
ATGGCTAACAATAACAATAATTTTTCAAATGATCCATTTGATCGCAACATGGATGATATTTTTAATCAACTAATGGGAAG
AATGAACGGTATCAACTCAGAATCACGTTATTTAGTTAATGGACAGGAGTTAACGCCTGAGGAGTTTGCACAGTATCGTC
AAACTGGCAAAATACCAAGTGGCAATGGTGAACAAGCTCAACAGCAGAATGGACAACAAGGACAAGCTGTAAATGAAAAA
GGAATTCTAGCACGTTTGGGCCGCAATTTAACTGATGAAGCTCGCAAGGGATTACTTGATCCTGTTATTGGAAGGAATAA
GGAAATCCAAGAAACAGCTGAGATTTTGAGTCGACGCACGAAGAATAATCCAATTCTTGTTGGAGACGCTGGTGTCGGTA
AGACCGCGGTTGTTGAGGGCTTGGCTCAATCGATCATCAGCGGTGATGTACCAGCTGCAATTAAGGGCAAGGAGATTTAT
TCAATTGATATTTCTTCATTAGAAGCTGGTACACAGTTCCGTGGTGCTTTTGAAGAAAATATTCAAAACTTGATCAAAGA
AGTTAAAAAAGCTGGAAATGTAATTTTATTCTTTGACGAAATTCATCAAATCTTGGGTGCCGGTTCTACTGGTGGAGAAG
ACGGCGGCAAAGGTATGGCTGATATTATTAAACCAGCATTGAGCCGTGGCGAAATCAGTGTAATTGGTGCAACAACTCAA
GATGAGTACCGTAACACAATTATGAAGAACGCTGCGCTGGCTCGTCGTTTTAATGACGTAACAGTGAACGCACCAAGTGC
CGATGATACATTTGCAATTTTGAAAGGAATTCGCAAATTATATCAAGAACATCATCGCGTTGAATTACCAGATGACGTTT
TAAAAGCGGCAGTTGATTATTCAATTCAATATATTCCACAACGCTCTTTACCAGATAAAGCGATTGATTTATTGGATATG
ACTGCAGCACATTTAGCAGCTCAACATCCAGTTACAGACAAGGTTAGCTTGGAAGCAGAATTAAAAGAAGCTGAAAAGGA
AAAAGACGAGGCAGCCGAAAAAGAGGATTATGAAGGTGCTGCAACAGCTAAAACTAAGATGATTCGTATTCAGAAGAAAT
TAGATGAAGCAACTAAGGAAGAACGACCAGTTGCAACGGCCTCGGATGTTGCTGATTCTGTTGAAAGATTGACAGGAATT
CCAGTTTCTCAAATGGGTGCGAGTGATATTGAACGCTTGAAGAAGATAAATGACCGATTGAAGGGTAAAGTAATTGGTCA
AGACGAAGCAGTTGATATGGTTGCGAAGGCAATTCGCCGTAATCGAGCTGGTTTTGATGAAGGCAACCGACCAATTGGTA
GTTTCCTATTTGTTGGACCAACTGGTGTCGGTAAGACAGAGCTTGCTAAACAGTTGGCACTTGACATGTTTGGTAGTAAA
GATGCAATTGTCCGACTCGATATGAGTGAATATACAGATACAACTGCAGTTTCTAAGCTAATTGGTACTACAGCTGGATA
TGTTGGTTACGAAGACAACTCTAATACTTTAACCGAGCGAGTTCGTCGTAATCCATATTCAATAGTACTATTAGACGAGA
TTGAAAAGGCAAATCCACAAGTTCTAACATTATTATTGCAAGTTATGGATGATGGACGTTTAACAGATGGACAAGGAAAC
GTGGTTGATTTTAAGAACACGATTATTATTGCGACATCTAACGCCGGATTTGGTAACGAGAGTATCACTGGTAATGATGG
CAAAGATAAGAGCTTAATGGATAAACTAGCACCATACTTCCGCCCAGAATTCTTGAATCGTTTCAACGGAATTGTTGAGT
TCAGCCACCTTACCAAAGATGATTTACATCAGATTGTTGACCTGATGATCGATGATGTTAATAGAACTTTGGATAAGAAG
GGTATCAAGCTTGAGGTTTCGAGTGATGCAAAAGATTGGCTGATTGATCAAGGCTACGATGAGGCAATGGGAGCACGTCC
ACTTCGTCGAGTTATTGAACAAGAGATCCGTGATAAGGTAACTGATTTCTACCTTGATCACTTGGATGCAAAGGATTTGA
AGGCCGATTTGGTTGAGGATCAGATTGTGATTTCGGAAAAATAA

Protein sequence :
MANNNNNFSNDPFDRNMDDIFNQLMGRMNGINSESRYLVNGQELTPEEFAQYRQTGKIPSGNGEQAQQQNGQQGQAVNEK
GILARLGRNLTDEARKGLLDPVIGRNKEIQETAEILSRRTKNNPILVGDAGVGKTAVVEGLAQSIISGDVPAAIKGKEIY
SIDISSLEAGTQFRGAFEENIQNLIKEVKKAGNVILFFDEIHQILGAGSTGGEDGGKGMADIIKPALSRGEISVIGATTQ
DEYRNTIMKNAALARRFNDVTVNAPSADDTFAILKGIRKLYQEHHRVELPDDVLKAAVDYSIQYIPQRSLPDKAIDLLDM
TAAHLAAQHPVTDKVSLEAELKEAEKEKDEAAEKEDYEGAATAKTKMIRIQKKLDEATKEERPVATASDVADSVERLTGI
PVSQMGASDIERLKKINDRLKGKVIGQDEAVDMVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSK
DAIVRLDMSEYTDTTAVSKLIGTTAGYVGYEDNSNTLTERVRRNPYSIVLLDEIEKANPQVLTLLLQVMDDGRLTDGQGN
VVDFKNTIIIATSNAGFGNESITGNDGKDKSLMDKLAPYFRPEFLNRFNGIVEFSHLTKDDLHQIVDLMIDDVNRTLDKK
GIKLEVSSDAKDWLIDQGYDEAMGARPLRRVIEQEIRDKVTDFYLDHLDAKDLKADLVEDQIVISEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 1e-128 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PECL_1544 YP_005005438.1 AAA ATPase VFG0080 Protein 2e-145 49
PECL_1544 YP_005005438.1 AAA ATPase VFG0079 Protein 1e-132 45