|
Name : MycrhN_2206 (MycrhN_2206) Accession : YP_005000012.1 Strain : Mycobacterium rhodesiae NBB3 Genome accession: NC_016604 Putative virulence/resistance : Virulence Product : chaperone ATPase Function : - COG functional category : - COG ID : - EC number : - Position : 2236362 - 2238905 bp Length : 2544 bp Strand : + Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif DNA sequence : ATGTTCGAGAGATTCACCGACCGTGCCCGCAGGGTCGTCGTCCTGGCTCAAGAAGAGGCCCGGATGCTCAACCACAACTA CATCGGAACCGAGCACATCCTTCTTGGGCTCATCCACGAGGGCGAGGGTGTGGCAGCCAAGTCGCTGGAGTCGCTCGGGA TCTCGCTCGAGGGTGTGCGCAGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCCTCCGGCCACATCCCCTTC ACCCCCCGCGCCAAGAAGGTGCTGGAGTTGTCTCTGCGCGAGGCGCTGCAGCTCGGCCACAACTACATCGGCACCGAGCA CATTCTGCTCGGCCTGATTCGCGAGGGCGAGGGCGTGGCCGCCCAGGTGCTCGTGAAGCTGGGCGCCGAGCTCACCCGCG TGCGTCAGCAGGTCATCCAGCTGCTGAGCGGTTACCAGGGCAAAGAGACCGCGGAAGCCGGTACCGGGGGCCGCGGCGGA GAGGCGGGCAACCCGTCGACGTCGCTGGTGCTCGATCAGTTCGGCCGTAACCTGACCGCCGCCGCCATGGAGGGCAAGCT CGACCCGGTCATCGGCCGTGAGAAGGAAATCGAGCGTGTCATGCAGGTGCTGAGCCGCCGCACCAAGAACAACCCGGTGC TGATCGGCGAGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCACAAGCGATCGTGCACGGCGAGGTTCCCGAG ACGCTGAAGGACAAGCAGCTTTACACGCTTGACCTCGGTTCGCTGGTGGCCGGTAGCCGCTACCGCGGTGACTTCGAGGA GCGCCTCAAGAAGGTGCTCAAGGAGATCAACACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTCGTGG GTGCGGGCGCCGCCGAGGGCGCTATCGACGCCGCATCGATCCTCAAGCCCAAGCTGGCCCGCGGCGAGCTGCAGACGATC GGTGCGACCACGCTCGACGAGTACCGCAAGTACATCGAGAAGGATGCCGCGCTGGAGCGGCGATTCCAGCCGGTGCAGGT CGGTGAGCCGACGGTCGAGCACACCATCGAGATCCTCAAGGGCCTTCGCGATCGCTACGAGGCGCACCACCGCGTCTCGA TCACCGATCCCGCGATCGTCGCGGCGGCCACCCTTGCCGACCGCTACATCAACGACCGGTTCCTGCCGGACAAGGCGATC GACCTGATCGACGAGGCCGGCGCGCGGATGCGCATCCGCCGGATGACCGCTCCGCCGGACCTGCGCGAATTCGACGAGAA GATCGCCGACGCACGTCGGGAGAAGGAATCCGCGATCGATGCGCAGGACTTCGAGAAGGCGGCCAGCCTGCGCGACAAGG AGAAGCAACTCGTCGCACAGCGTGCCGAGCGTGAGAAGCAGTGGCGCTCAGGGGATCTCGACGTCGTTGCCGAGGTCGAC GACGAGCAGATCGCCGAGGTGCTCGGCAACTGGACCGGTATCCCCGTGTTCAAGCTGACCGAGGAGGAGACCACTCGGCT GCTGCGCATGGAGGAGGAGCTGCACAAGCGGATCATCGGCCAGGAGGACGCCGTCAAGGCGGTCTCCAAGGCGATCAGGC GCACCCGCGCCGGCCTGAAGGATCCCAAGCGGCCGTCGGGCTCGTTCATCTTCGCCGGCCCGTCCGGTGTCGGTAAGACC GAGCTGTCCAAGGCGCTGGCGAACTTCCTGTTCGGCGACGACGACGCACTCATCCAGATCGACATGGGCGAGTTCCACGA CCGCTTCACCGCCTCGCGGCTGTTCGGCGCCCCTCCGGGCTACGTCGGTTACGAGGAAGGTGGTCAGCTCACCGAGAAGG TGCGTCGCAAGCCGTTCAGCGTCGTGCTGTTCGACGAGATCGAGAAGGCTCACCAGGAGATCTACAACAGCCTCCTGCAG GTTCTCGAAGACGGCCGCCTGACCGATGGTCAGGGTCGCACGGTCGACTTCAAGAACACGGTCTTGATCTTCACGTCGAA CCTGGGCACCTCGGACATATCGAAGGCGGTCGGACTCGGCTTCACCCAGGGTGGCGGCGAGAACAACTACGAGCGGATGA AGCAGAAGGTCAACGACGAGCTGAAGAAGCACTTCCGGCCCGAGTTCCTCAACCGCATCGACGACATCATCGTCTTCCAC CAGCTGACTCGCGACGAGATCATCCAAATGGTCGACCTGATGATCGGCCGGGTGGAGAAGCAGCTCAAGGCCAAGGACAT GGCCATGGAGCTCACCGACAAGGCCAAGTCGCTATTGGCCAAGCGCGGATTCGACCCCGTGCTCGGCGCGCGGCCGCTGC GTCGCACCATCCAGCGCGAGATCGAGGACCAACTCTCCGAGAAGATCCTCTTCGAGGAAGTCGGTCCCGGCCAGCTCGTC ACCGTCGACGTCGACAACTGGGATGGCGAGGGTGCGGGCGAGGACGCGGTCTTCACCTTCACCGGCACCAAGAAGCCGGC CAAGATCGACGAGCCGGCGGACCTGGCTCAGGCCGGTGCCGCAGGAGCAACGAGCGTCGAATAA Protein sequence : MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPF TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKETAEAGTGGRGG EAGNPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVHGEVPE TLKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEINTRGDIILFIDELHTLVGAGAAEGAIDAASILKPKLARGELQTI GATTLDEYRKYIEKDAALERRFQPVQVGEPTVEHTIEILKGLRDRYEAHHRVSITDPAIVAAATLADRYINDRFLPDKAI DLIDEAGARMRIRRMTAPPDLREFDEKIADARREKESAIDAQDFEKAASLRDKEKQLVAQRAEREKQWRSGDLDVVAEVD DEQIAEVLGNWTGIPVFKLTEEETTRLLRMEEELHKRIIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKT ELSKALANFLFGDDDALIQIDMGEFHDRFTASRLFGAPPGYVGYEEGGQLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQ VLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKAVGLGFTQGGGENNYERMKQKVNDELKKHFRPEFLNRIDDIIVFH QLTRDEIIQMVDLMIGRVEKQLKAKDMAMELTDKAKSLLAKRGFDPVLGARPLRRTIQREIEDQLSEKILFEEVGPGQLV TVDVDNWDGEGAGEDAVFTFTGTKKPAKIDEPADLAQAGAAGATSVE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 82 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| MycrhN_2206 | YP_005000012.1 | chaperone ATPase | VFG0079 | Protein | 0.0 | 61 |
| MycrhN_2206 | YP_005000012.1 | chaperone ATPase | VFG0080 | Protein | 2e-144 | 51 |
