Gene Information

Name : BYI23_C000690 (BYI23_C000690)
Accession : YP_004978653.1
Strain :
Genome accession: NC_016590
Putative virulence/resistance : Virulence
Product : two component Fis family sigma54-specific transcriptional regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 87850 - 89229 bp
Length : 1380 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGACCATCCTGATCATCGACGACGACGACGCCTTTCGCGAAGGCCTCGCCGAAACCGTGCAAGACCTCGGGTACTC
GCCGTCCGAAGCACGCTCGGGCGAAGAAGCCTTCGAGCAGTTGCGCGGCCGTCCGGCGCCCGACTGTATCTTTCTCGACT
TCCGTTTGCCCGGCGCGGACGGTCTCGCCGTGCTCGACACGCTGCGCAAGACGCCGGGGCTGCAGACCGTGCCCGTCGTG
ATGCTCACCGCGCACGCGACGAGCGACAACACCATCGGTGCGATGCGGCTCGGCGCCTTCGAGCACCTCACCAAGCCGGT
CGGACGGGACGAGATCGCCGCGCTGCTCGAGCGCATTCTGTCGGCGCAGGTCGGCACGCCCGCCGCGCGCGTGTTTGCCG
AGGAGGCCCGCTCCCATGAGCCGCAACTGCTCGGTGTAAGCGAAGCCATGCGGGAGGTGCAAAAGCGCATCGGCCGCGCG
GCGGGCGCGAATTCGACGGTGCTCATCACGGGCGAAACGGGAACCGGCAAGGAAATCGCGGCGCGTGTGCTGCACCGCGC
GTCGGCACGAGGAAGCGGCCCGTTCATCGCGGTGAACTGCGCGGCCATCCCTGACGAACTGCTCGAAAGCGAGCTCTTCG
GGCACGGCAAGGGCGCCTTCACCGGCGCGCAGGCCGAGCGGCGCGGGCGAGTGGAAGAGGCGCATGGCGGCACGCTCTTT
CTCGATGAAGTCGGCGACATGCCGCTTCCCATGCAGGCCAAACTCCTGCGCGTGCTGCAGGAACGGCAGGTCACGCCCCT
CGGAACGAACCGCATCGTGACCGTCGATGTGCGCGTGGTTGCCGCCACGCATCGCCATCTCGCATCGATGGTCGAAGCGG
GCACGTTCCGGCAGGACTTGCTGTTTCGTCTCAACGTGATCCCGTTGCATCTGCCGCCGCTGCGCGAGCGCGTGGCCGAC
ATCCTGCCGCTCGCCGAGCACTTTCTTGCGGGCGCGCCGTCCGCATCGCCGGATATCGCGCGCAAGCATCTATCAGCCGA
TGCGCAGCGCCTGCTCGCCACCTTCGCGTGGCCGGGCAACGTCCGCGAGCTTGCCAATGCGATCGAACGGGCGAGCGCGC
TTGCGCCCGGACAGGTGCTGACGCGCGAAGACTTCGCGTTTCTGACGGCGACGAAAGACAGCGCGGATGACGCGATTCCC
CTGGCCCTGCTCGAACTTCCCCTCCCGCAAGCGGTGGCGCAACTGGAGCGGGCGCTGATCGTTCATGCGCTCTCGGCATC
GGGCGGCAATCGCGCCGAGGCCGCGCGCCGGCTCGGCATCAGCCGCCAGTCGCTCTATACGCGCATGGCGGCGCTCAGCA
TGTCCGAGGCTTCCGCGTGA

Protein sequence : 
MATILIIDDDDAFREGLAETVQDLGYSPSEARSGEEAFEQLRGRPAPDCIFLDFRLPGADGLAVLDTLRKTPGLQTVPVV
MLTAHATSDNTIGAMRLGAFEHLTKPVGRDEIAALLERILSAQVGTPAARVFAEEARSHEPQLLGVSEAMREVQKRIGRA
AGANSTVLITGETGTGKEIAARVLHRASARGSGPFIAVNCAAIPDELLESELFGHGKGAFTGAQAERRGRVEEAHGGTLF
LDEVGDMPLPMQAKLLRVLQERQVTPLGTNRIVTVDVRVVAATHRHLASMVEAGTFRQDLLFRLNVIPLHLPPLRERVAD
ILPLAEHFLAGAPSASPDIARKHLSADAQRLLATFAWPGNVRELANAIERASALAPGQVLTREDFAFLTATKDSADDAIP
LALLELPLPQAVAQLERALIVHALSASGGNRAEAARRLGISRQSLYTRMAALSMSEASA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-63 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-63 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BYI23_C000690 YP_004978653.1 two component Fis family sigma54-specific transcriptional regulator BAC0089 Protein 9e-65 43
BYI23_C000690 YP_004978653.1 two component Fis family sigma54-specific transcriptional regulator BAC0467 Protein 3e-72 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BYI23_C000690 YP_004978653.1 two component Fis family sigma54-specific transcriptional regulator VFG1249 Protein 1e-61 43
BYI23_C000690 YP_004978653.1 two component Fis family sigma54-specific transcriptional regulator VFG0116 Protein 6e-64 42
BYI23_C000690 YP_004978653.1 two component Fis family sigma54-specific transcriptional regulator VFG1214 Protein 3e-68 41