Gene Information

Name : Desor_4879 (Desor_4879)
Accession : YP_004972795.1
Strain : Desulfosporosinus orientis DSM 765
Genome accession: NC_016584
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5075464 - 5076234 bp
Length : 771 bp
Strand : -
Note : PFAM: FliP family; TIGRFAM: type III secretion apparatus protein, YscR/HrcR family; flagellar biosynthetic protein FliP

DNA sequence : 
ATGATGTCTTCTTCAGGCTGTATAAGCAAAGTTGTGAAACTAGGCTTGCCCTTTAGCGTATCTTTGCTGTCTGGACTTTT
GATTAGCCCCAAAATGGCCTGGGCGGCGGGAATTACTCTGGACTTAGGAACTTCTGCTCCAGAACAAACGAGTACATCGC
TTCAGCTTTTGATGCTATTGACAATCCTGTCTTTAGCTCCGGCCATTCTCATGATGATGACATCCTTTACACGGATCGTT
ATTGTTTTGTCTTTTGTGAGAAATGCCTTAGGTACTCAACAGCTTCCGCCCAACCAAGTGCTTGTAGGGTTAGCTCTTTT
TCTCTCCTTTTTCGTCATGGCTCCGACTTGGAATGAGATCAATACTAATGCAGTTCAACCCTATATCAAGCATCAGATAA
CTCAATCGGAGGCTCTTGACAGAGCAGAGGAACCTCTTAGAATGTTTATGTTTAAACAGACACGAGAGAAAGATTTGCAG
CTGTTTGTCGGGCTGTCTAAAATGGAGCAGCCTAAAACCTATAGAGATGTTCCCACCTATGTATTAATTCCGGCCTTTGT
GATTAGCGAGCTCAAGACAGCTTTTCAAATGGGATTTGCCATATTTGTACCTTTTATTGTTATTGATATGATTGTATCCA
GCACGCTGATGTCAATCGGTATGATGATGCTTCCCCCGATGATGATTTCCTTACCTTTTAAATTGTTGTTGTTTGTGCTG
GTTGATGGCTGGCATTTGGTAGTTGAGTCATTAGTTACGAGTTTCCATTAG

Protein sequence : 
MMSSSGCISKVVKLGLPFSVSLLSGLLISPKMAWAAGITLDLGTSAPEQTSTSLQLLMLLTILSLAPAILMMMTSFTRIV
IVLSFVRNALGTQQLPPNQVLVGLALFLSFFVMAPTWNEINTNAVQPYIKHQITQSEALDRAEEPLRMFMFKQTREKDLQ
LFVGLSKMEQPKTYRDVPTYVLIPAFVISELKTAFQMGFAIFVPFIVIDMIVSSTLMSIGMMMLPPMMISLPFKLLLFVL
VDGWHLVVESLVTSFH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 7e-20 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 7e-20 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 7e-20 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 4e-26 41
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-20 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-21 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-21 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-22 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-22 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-22 41
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-22 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-26 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-26 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-26 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 3e-26 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-13 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-13 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desor_4879 YP_004972795.1 flagellar biosynthetic protein FliP VFG1259 Protein 3e-46 61
Desor_4879 YP_004972795.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-43 58
Desor_4879 YP_004972795.1 flagellar biosynthetic protein FliP VFG2494 Protein 1e-43 57
Desor_4879 YP_004972795.1 flagellar biosynthetic protein FliP VFG2338 Protein 2e-43 55
Desor_4879 YP_004972795.1 flagellar biosynthetic protein FliP VFG0394 Protein 7e-25 44
Desor_4879 YP_004972795.1 flagellar biosynthetic protein FliP VFG0188 Protein 2e-24 43
Desor_4879 YP_004972795.1 flagellar biosynthetic protein FliP VFG0044 Protein 2e-26 42
Desor_4879 YP_004972795.1 flagellar biosynthetic protein FliP VFG0519 Protein 1e-22 41