Gene Information

Name : Desor_0208 (Desor_0208)
Accession : YP_004968442.1
Strain : Desulfosporosinus orientis DSM 765
Genome accession: NC_016584
Putative virulence/resistance : Virulence
Product : chaperone ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 200900 - 203341 bp
Length : 2442 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; UvrB/uvrC motif; ATPase family associated with various cellular activities (AAA)

DNA sequence :
ATGAAAGGACGTTATACCGAACGCGCAGAGAAGGTGTTATCAATAGCCCAGGAGGAAGCTAAACGAATGGGTCACCAAGT
CGTAGGAACTGAGCATATTTTACTGGGTCTTATTCAAGAGGGTGAAGGGATTGCAGCTCAGGCACTATTAGGCATGAATG
TGGATCTTGCTAAAATCCGTACTCAGGTGGAACAATTGACCGGCGTGGGCCAGCCCCATAATGCAGAGGTTGGCTTTACT
CCTCGAGTTAAAAAAGTATTGGAATTGGCCAATGAGGAGGCTTACCGGCAAGAGGTCAATTATATTGGCACGGAACATTT
GCTGCTAGGGCTAATTATGGAAGGGGAAGGTATTGCGGCCCGGATTTTAGCTAACCTCAACGTGAGCCCTGAAAGGGTAT
GGAAGCAAATTGTTAAATTATTGGGCGGAGAATTAGAAGAGGCTGCTATACCTGTCCCCAATTCTGTGACTGCATCAAAA
AATTCCGGTTCCGTTAACACACCGGCTCTCAATGAGTTCGGCAGAGATCTAACCTTACAAGCCAGGGAAGGCCGCTTAGA
TCCTGTTATCGGAAGAGAAAAGGAAATCGAGAGGGTTATTCAGGTACTAAGCCGCCGCACCAAAAATAATCCGGCTCTGA
TAGGAGAGCCGGGCGTTGGGAAAACAGCCATTGCTGAAGGGTTGGCACAAGGTATTGTCGGCAACAGAGTGCCGGAAATT
CTCAGCAACAAACGGGTGATTACCCTGGATCTTTCTGCCATGGTAGCAGGAAGCAAATACCGCGGTGAATTTGAAGAACG
GTTAAAGAAAGTGATGGAGGAGATTCGAGCAGACGGAAATATCATCCTCTTCATTGACGAATTGCATACTTTAATTGGGG
CAGGAGCGGCGGAAGGGGCCATTGATGCCGCTAATATTCTTAAACCGGCTTTGGCCAGAGGGGAACTCCAGTGCATTGGA
GCGACAACCTTGGAAGAATACAGGAAATATATTGAGAAGGATTCTGCCTTAGAACGTCGTTTCCAGCCGATTTCAGTGGG
TGAGCCAACCGTTGAGGAAGCAATTGTGATCCTCAGAGGTTTACGGGACCGGTATGAAGCTCATCATCGGATTAAAATCA
CAGATGAGGCCATTGAAGCCGCGGCCCGTTTATCGGATCGTTATATTTCCGACCGTTTCTTGCCGGATAAAGCGATTGAC
TTGATGGATGAAGCAGCTTCCCGAGTACGTTTAGCAAGTTTCACTGCCCCTCCGGATTTGAAACAGCTTGAGGAAGAAGC
CGATCGACTAAAGAAAGAGAAAGAGGCAGCCGTATCCAGCCAAGAATTTGAAAAGGCGGCTGAATTTCGGGATAAAGAAC
AAAAGATTAGGGCCGAGCTGGCTGAGCAGCGAGGAGCTTGGCAAAATCAAAGGAATAAAGAGAATGCTATGGTTACCGCG
GATGATATCGCGCAAATTGTAGCGAGCTGGACAGGGATACCGGTTAAAAAACTGGCAGAAGAAGAGAGTGAGCGTCTCTT
GCACTTGGAGGATCTTCTTCATCAGCGCCTTGTCGGTCAAGATGATGCCGTTGCCGCCGTTGCTCGGGCTGTGCGCCGGG
CCAGGGCAGGATTAAAGGACCCCAAGCGCCCCATTGGTTCCTTCATTTTCCTGGGTCCCACAGGAGTTGGAAAAACCGAG
CTGGGCCGGGCTTTGGCAGAAGGAATGTTTGGAGACGAAAAGGCCCTGATTCGCATAGACATGTCCGAATATATGGAGAA
ACATGCCGTTTCCCGGCTGGTGGGAGCACCTCCTGGGTATGTAGGCCATGACGAAGGCGGTCAGCTTACGGAAGCGGTAA
GGAGAAAACCTTACAGTGTGGTTTTGCTGGATGAAATTGAAAAGGCCCATCCTGAAGCCTTCAATATTTTACTTCAAGTT
CTGGAGGATGGACGTCTGACGGACACCAAGGGCAGGACTGTCGATTTCCGGAATACGGTAATCATTATGACATCTAATGT
TGGCTCCTCCTTCCTTAAAAAAGAGGCTATGGGCTTTGCACCTAAAAAGGATGAAAAAACCGATTATAAAAACATGCGCG
GACATGTGATGGAAGAGTTGAAACGTTCCTTCCGCCCAGAGTTTCTAAACCGAATTGATGAGATCGTAGTTTTCCATGCT
CTTCAAGAGGAACACTTGGTGAAGATTGCCGGAATATTAGTTCATCAAGTCAATAAGCGCTTAAGTGAGAATGGTCTGGA
GCTGGAGATTGAAAAGAGCGCTGTTGAACTGATTGCTAAGGAAGGAAATGATCCTATTTTTGGAGCGCGTCCTCTGCGCC
GGGCGATTCAGCGCCTAATTGAGGATGCTCTTTCCGAAAAGATACTTGAGGGACAATTTAAGCCAGGGGATCGAATTCGC
GTCGAGGCAGAAGATGGAACGATGAAGTTCTCCAAGGTGTGA

Protein sequence :
MKGRYTERAEKVLSIAQEEAKRMGHQVVGTEHILLGLIQEGEGIAAQALLGMNVDLAKIRTQVEQLTGVGQPHNAEVGFT
PRVKKVLELANEEAYRQEVNYIGTEHLLLGLIMEGEGIAARILANLNVSPERVWKQIVKLLGGELEEAAIPVPNSVTASK
NSGSVNTPALNEFGRDLTLQAREGRLDPVIGREKEIERVIQVLSRRTKNNPALIGEPGVGKTAIAEGLAQGIVGNRVPEI
LSNKRVITLDLSAMVAGSKYRGEFEERLKKVMEEIRADGNIILFIDELHTLIGAGAAEGAIDAANILKPALARGELQCIG
ATTLEEYRKYIEKDSALERRFQPISVGEPTVEEAIVILRGLRDRYEAHHRIKITDEAIEAAARLSDRYISDRFLPDKAID
LMDEAASRVRLASFTAPPDLKQLEEEADRLKKEKEAAVSSQEFEKAAEFRDKEQKIRAELAEQRGAWQNQRNKENAMVTA
DDIAQIVASWTGIPVKKLAEEESERLLHLEDLLHQRLVGQDDAVAAVARAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE
LGRALAEGMFGDEKALIRIDMSEYMEKHAVSRLVGAPPGYVGHDEGGQLTEAVRRKPYSVVLLDEIEKAHPEAFNILLQV
LEDGRLTDTKGRTVDFRNTVIIMTSNVGSSFLKKEAMGFAPKKDEKTDYKNMRGHVMEELKRSFRPEFLNRIDEIVVFHA
LQEEHLVKIAGILVHQVNKRLSENGLELEIEKSAVELIAKEGNDPIFGARPLRRAIQRLIEDALSEKILEGQFKPGDRIR
VEAEDGTMKFSKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 58
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 9e-88 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desor_0208 YP_004968442.1 chaperone ATPase VFG0079 Protein 0.0 64
Desor_0208 YP_004968442.1 chaperone ATPase VFG0080 Protein 1e-141 51