Gene Information

Name : fepD (SBI_08217)
Accession : YP_004966466.1
Strain : Streptomyces bingchenggensis BCW-1
Genome accession: NC_016582
Putative virulence/resistance : Virulence
Product : ferrichrome ABC transport system permease protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 9712242 - 9713291 bp
Length : 1050 bp
Strand : +
Note : COG0609 ABC-type Fe3+-siderophore transport system, permease component

DNA sequence :
GTGACCCTGCTCAGTCCGGCGAGAGCCGGGACCGAAACAGCGACCGCGCCACCCGGGCGGCAGGCCGCGCGCCGCGCGGC
CGGGCTCGTCGCTTCCCTGGGGGTCCTGCTGGTGGTCGTGGCCGCCAGCGTCGCGATCGGTGCCAAGCCGATTCCGCTCG
GTGAGGTCTGGCACGGGCTGTTCCACTACAGCGGCAGCGACACCGATGTGGTGGTCCGGGACGTGCGGGTGCCGCGTACC
GTGCTCGGGCTGCTGGTGGGCGTCGCGCTCGGGCTTGCGGGCGCGGTGATCCAGGCGCTCACCCGCAATCCGCTCGCCGA
CCCGGGGCTGCTCGGGCTGAACGCGGGCGCGTCCGCCGCCGTCGTCACGGCCATCAGCTTTCTGGGCGTCACCTCCCTGA
CCGGCTATGTGTGGTTCGCGTTCGCCGGCACCGCCGTCGCGTCCGTGCTCGTCTACGCGCTCGGCGGCAGCCGGGGGGCC
ACACCGGTGCGGCTGGCGCTCGCCGGTACGGCCGTGTACGCGGCGCTCTACGGCTATCTCAACGCCGTTGAGCTGCTGGA
CACGGCGGCCCTGGACAAGATGCGTTTCTGGACGGTCGGTTCGCTCGCCTCCGCGAACATGACGGTCGTCAAGCAGGTCG
CGCCGTTTATCGCCGTCGGCGTGGTCCTCGCCCTGGCGCTCGGCCGGGCGCTGAACGCCGTCGCGCTCGGCGACGACACG
GCGCGCGCCCTTGGCACCAACCTCACCCGCACCCGCGTGCTCGCCATGGCCGCCGTCACCCTGCTGTGCGGGGCCGCGAC
GGCCGCCTGCGGGCCGATCGCGTTCGTCGGCCTGATGGTGCCGCATGTCGTACGGGCGCTCACCGGGCCCGATCTGCGCT
GGATCCTGCCGTACGCCGCGGTGCTCTCGCCGGTGCTGCTGCTGGGCGCCGATGTGATCGGCCGGGTCGTGTCGCGGCCC
TCGGAGCTGCAGGCCGGGGTCGTCACCACGCTCATCGGCGGGCCCGTCTTCATCTACCTCGTCCGGCGCCGAAGGATGGC
CCAGCTGTGA

Protein sequence :
MTLLSPARAGTETATAPPGRQAARRAAGLVASLGVLLVVVAASVAIGAKPIPLGEVWHGLFHYSGSDTDVVVRDVRVPRT
VLGLLVGVALGLAGAVIQALTRNPLADPGLLGLNAGASAAVVTAISFLGVTSLTGYVWFAFAGTAVASVLVYALGGSRGA
TPVRLALAGTAVYAALYGYLNAVELLDTAALDKMRFWTVGSLASANMTVVKQVAPFIAVGVVLALALGRALNAVALGDDT
ARALGTNLTRTRVLAMAAVTLLCGAATAACGPIAFVGLMVPHVVRALTGPDLRWILPYAAVLSPVLLLGADVIGRVVSRP
SELQAGVVTTLIGGPVFIYLVRRRRMAQL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 6e-34 44
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 6e-34 44
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 8e-16 41
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 8e-16 41
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 8e-16 41
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 8e-16 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fepD YP_004966466.1 ferrichrome ABC transport system permease protein VFG0926 Protein 6e-32 50