Gene Information

Name : SBI_02658 (SBI_02658)
Accession : YP_004960910.1
Strain : Streptomyces bingchenggensis BCW-1
Genome accession: NC_016582
Putative virulence/resistance : Virulence
Product : putative glycine betaine aldehyde dehydrogenase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3514560 - 3516029 bp
Length : 1470 bp
Strand : +
Note : COG1012 NAD-dependent aldehyde dehydrogenases

DNA sequence :
ATGCCGGAGCTGTTCATCGGTGGCCAGTGGACCGCCGCTCTCGACGGACGAGTGAGGGAGATCCGCTCCCCCGCGGACGG
CACGCTGGTCGGCACGGTCGACGATGCCGGCCCCAAGGACGCCTCCGCCGCGGCCGAGGCCGCCCGGGACGCGTTCGACC
GCGGCCCGTGGCCCCGCCTGCCCGCCGCGGAGCGGGGCAGGTTGCTGCTGCGCGTCGCCGATCTGCTGCGCCGCGACAAG
GCCGAACTGGCCCGCGCGGAGTCGATGGACACCGGAAAGCGGCTGGTCGAGAGCGAGTACGACCTCGACGATGTCGCCGC
CTGCTTCCGCTGGTTCGGCGATCTGGCCGCCACCGACGGGGCGGACCGGGTCGTCGACACGGGCCGCCCCGAGATCGACA
GCATGGTCGTGCACGAGCCGGTCGGCGTCTGCGTGCTGATCACCCCGTGGAACTACCCGCTGTTGCAGACCAGTTGGAAG
GTCGCCCCCGCGCTCGCCGCCGGCGACACCTTCGTCCTCAAGCCCAGCGAACTGACCCCGCACTCCGCGATCGGCCTGAT
GCGGCTGCTGGCGGAGGCCGGGCTCCCGGCGGGCACCGCCAACCTCGTTCTGGGCACCGGGGCGACGGTGGGCGCGCCGC
TGACCACGGACGAGCGGGTGGACATGGTGTCGTTCACCGGCGGGGTGCCCACCGGGCGGTGGATCATGGCCGCCGCCGCG
CCCACGGTCAAGAAGCTCGCCCTGGAGCTGGGCGGCAAGAACCCCAATGTGGTGTTCGCCGACGCCGAGTTCGACAGCGC
CGTCGACCACGCCCTGACCGCCGTCTTTCTGCACTCCGGACAGGTCTGCTCGGCCGGCGCCCGGCTGCTCGTCCAGGAGA
AACTGCACGACGCGTTCGTCGACGAGGTCGTCCACCGCGCCCGCAGGATCCGGCTCGGCGGCCCCTTCGACGAGCACGCC
CGCGCCGGCCCGCTGATCTCCGCCGACCACCGCGAGAAGGTCGCGATGTATGTGGCGGCCGGGCTGGACGAGGGCGCGGT
GCTGCGCTGCGGCGGCACACCGCCGGCCGACCCGACGCTGGAGGACGGCTACTACTACCTGCCGACCGTGCTGGACGACT
GCACCCCGGACATGTCCGTCGTCCAGGAGGAGTCGTTCGGCCCGGTGCTGACGGTCGAGCGGTTCCGCGACGAGGACGAA
GCGCTCGCCCTGGCCAACGACACCGTCTACGGCCTGGCCGCGGCTGTGTGGACACAAGACGCCGCCCGAGCGCACCGGAT
GGCCTCGCGGCTGCGCGCCGGCACGGTGTGGGTCAATGACTTCCACCCCTATGTGCCGCAGGCCGAGTGGGGCGGCATGA
AGCAGTCCGGCACGGGGCGGGAGTTGGGCCGGACGGGGCTGGCCGAGTATCAGGAGACCAAGCACATCTGGCGCAACACG
GCGCCGAGCCCGCAGCGCTGGTTCGAGTAG

Protein sequence :
MPELFIGGQWTAALDGRVREIRSPADGTLVGTVDDAGPKDASAAAEAARDAFDRGPWPRLPAAERGRLLLRVADLLRRDK
AELARAESMDTGKRLVESEYDLDDVAACFRWFGDLAATDGADRVVDTGRPEIDSMVVHEPVGVCVLITPWNYPLLQTSWK
VAPALAAGDTFVLKPSELTPHSAIGLMRLLAEAGLPAGTANLVLGTGATVGAPLTTDERVDMVSFTGGVPTGRWIMAAAA
PTVKKLALELGGKNPNVVFADAEFDSAVDHALTAVFLHSGQVCSAGARLLVQEKLHDAFVDEVVHRARRIRLGGPFDEHA
RAGPLISADHREKVAMYVAAGLDEGAVLRCGGTPPADPTLEDGYYYLPTVLDDCTPDMSVVQEESFGPVLTVERFRDEDE
ALALANDTVYGLAAAVWTQDAARAHRMASRLRAGTVWVNDFHPYVPQAEWGGMKQSGTGRELGRTGLAEYQETKHIWRNT
APSPQRWFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAK01506.1 putative aldehyde dehydrogenase Not tested PAGI-1 Protein 2e-64 43
hpaE AAO17179.1 HpaE Not tested tcd island Protein 2e-61 42
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-66 41
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 1e-66 41
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 1e-66 41
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 1e-66 41
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBI_02658 YP_004960910.1 putative glycine betaine aldehyde dehydrogenase VFG0082 Protein 4e-67 41