Gene Information

Name : FCOL_12140 (FCOL_12140)
Accession : YP_004943022.1
Strain : Flavobacterium columnare ATCC 49512
Genome accession: NC_016510
Putative virulence/resistance : Resistance
Product : ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2862069 - 2862758 bp
Length : 690 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGGATAAGTCATTAATCAAAATATCAAACATTAAACGGGATTTTCAATTAGGTAGTGAAATCATCCACGTTTTAAAAGG
TATTGATTTACAAATCAACAAAGGCGAATATGTTGCCTTAATGGGCCCTTCTGGTTCTGGAAAATCAACTCTAATGAATC
TTCTTGGTTGTTTAGACACCCCTACCTCGGGTCAGTACATTTTAAACGGAAAAGATGTTTCCAAGATGAAAGATGATGAA
TTAGCCGAAATCAGAAACAAAGAAATTGGCTTTGTCTTTCAAACTTTTAATTTGCTACCTAGAACAACTGCACTTGACAA
CGTTGCACTACCTATGATTTACGCAGGGTACTCTAAATCTGATAGAACTCAAAGAGCCAAAGAAGTCCTTAATCAAGTAG
GATTAGGCGATCGTATGGACCATCAACCCAATCAACTCTCTGGAGGACAACGCCAGCGGGTGGCAGTAGCAAGAGCATTA
GTAAATAACCCTTCTATTATCTTAGCTGATGAGCCTACTGGAAACTTAGATAGTAAAACTTCAATAGAAATCATGAAACT
GTTTAATGAAATTCATTCTAACGGGAATACCGTCATTCTCGTCACTCATGAAGAAGATATTGCCCAATACGCTCATAGAA
TTATCCGATTAAAAGATGGAATAATCGAAAGTGATAATAGGAATAAATAG

Protein sequence : 
MDKSLIKISNIKRDFQLGSEIIHVLKGIDLQINKGEYVALMGPSGSGKSTLMNLLGCLDTPTSGQYILNGKDVSKMKDDE
LAEIRNKEIGFVFQTFNLLPRTTALDNVALPMIYAGYSKSDRTQRAKEVLNQVGLGDRMDHQPNQLSGGQRQRVAVARAL
VNNPSIILADEPTGNLDSKTSIEIMKLFNEIHSNGNTVILVTHEEDIAQYAHRIIRLKDGIIESDNRNK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-36 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-38 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-38 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FCOL_12140 YP_004943022.1 ABC transporter ATPase NC_012469.1.7686878. Protein 4e-61 58
FCOL_12140 YP_004943022.1 ABC transporter ATPase NC_008702.1.4606598. Protein 5e-51 50
FCOL_12140 YP_004943022.1 ABC transporter ATPase CP001581.1.gene798.p Protein 1e-43 45
FCOL_12140 YP_004943022.1 ABC transporter ATPase CP001581.1.gene598.p Protein 6e-44 43