|
Name : lysS (FCOL_10525) Accession : YP_004942705.1 Strain : Flavobacterium columnare ATCC 49512 Genome accession: NC_016510 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 2487836 - 2489527 bp Length : 1692 bp Strand : + Note : COG1190 Lysyl-tRNA synthetase (class II) DNA sequence : ATGCAACTTTCAGAACAAGAAATCATCAGAAGAGAAAAGTTGACCAAGTTACGTGAACTTGGTATCAATCCGTATCCCGC TAATTTGTATCCAGTAGATCATACTTCGAAACAAATAAAGGAATCTTTTGAAGAAGGTAAGAAGGTTGTAGTAGCGGGTC GTTTGATGAGTAACCGCGACCAAGGAAAAGCTTGTTTTAGTGAAATTCAAGATAGCGAAGGACGTATTCAAGCATATTTT AACCGAGATATTATTTGCTCTGGAGAGGATAAAACCTTATACAATACAGTTTTTAGAAAGTTAGTGGATTTAGGCGATTT TATAGGAATAGAAGGTGAATTATTTACTACACAAGTAGGCGCACAATGTATTCGTGTAACGAACTTTACTTTTTTAAGTA AAACGTTACGTCCTTTACCAATGCCTAAAACAGACGAAACAGGTAAGGTTTTTGACGAATTCATAGATCCTGAACTACGT TACCGTATGCGTTATGTGGATTTGGTAGTAAATCCACAAGTAAAAGAGGTATTTGTAAAAAGAACGAAACTCTTTACTGC CATGCGTACATTTTTTAACAACGCTGGTTACATGGAAGTAGAAACACCTGTTTTACAGTCTATCCCCGGAGGAGCGGCAG CACGCCCATTTATTACACATCACAATAGTTTAGATATCCCTTTATATATGCGTATTGCTAATGAGTTGTATTTAAAGCGA TTAATTGTAGGTGGATTTGACGGCGTATATGAGTTTTCTAAAAACTTCCGCAATGAAGGTATGGACAGGACTCATAATCC AGAATTTACCGCTATGGAAATTTATGTAGCGTATAAAGACTACAACTGGATGATGGCGTTTACTGAAAATTTATTAGAAT ACTGTGCATTACAAGTTAATGGTACTACGGAAGCTACTTTTGGTGAACATAAAGTAAATTTCAAGGCTCCTTACGCTCGT GTTACGATGACTGACGCGATCAAACAATTTACAGGTTTTGATATAACGGGTAAGACTGAAGAAGAATTACGTGAAGCAGC AAAATCTATGGGCATTGAGGTAAATGACACCATGGGTAAAGGAAAATTAATTGATGAAATATTTGGCGAAAAATGTGAAG GTAATTTCATTCAACCAACTTTTATTACGGATTATCCAAAAGAGATGTCTCCTTTAACTAAAGAACACCGCGATAATCCT GATTTAACGGAACGTTTTGAGTTAATGGTTTGTGGAAAAGAAATAGCCAATGCTTATTCAGAACTAAACGATCCTATTGA CCAGCGAGAACGTTTTGTCGCGCAAATGGAGTTAGCCCAAAAAGGAGATGATGAAGCCAATGGAATTATTGATGAAGATT TTTTACGAGCTTTAGAATATGGAATGCCTCCTACTTCGGGATTAGGTATAGGTATGGATCGTTTAATTATGTTCTTAACC AATAATGCGTCTATTCAGGAGGTATTATTCTTCCCTCAAATGCGTCCAGAAGTAAAGCCATTAGCTATAAGTGATGATGC AAAGACTATCGTTGAATTACTAAAAGTTGAAGACAATCAAACTTTAGCTCTTTTAAAAGAAAAATCAGGCTTGAGTGGCA AAAAATGGGATGCTTCGATGAAAGAATTAACAAAAGCGGGCTTGACGAAAGTAGTCGTTGAGGGCGAAAGTAAAACGGTT GTTCTTTTATAA Protein sequence : MQLSEQEIIRREKLTKLRELGINPYPANLYPVDHTSKQIKESFEEGKKVVVAGRLMSNRDQGKACFSEIQDSEGRIQAYF NRDIICSGEDKTLYNTVFRKLVDLGDFIGIEGELFTTQVGAQCIRVTNFTFLSKTLRPLPMPKTDETGKVFDEFIDPELR YRMRYVDLVVNPQVKEVFVKRTKLFTAMRTFFNNAGYMEVETPVLQSIPGGAAARPFITHHNSLDIPLYMRIANELYLKR LIVGGFDGVYEFSKNFRNEGMDRTHNPEFTAMEIYVAYKDYNWMMAFTENLLEYCALQVNGTTEATFGEHKVNFKAPYAR VTMTDAIKQFTGFDITGKTEEELREAAKSMGIEVNDTMGKGKLIDEIFGEKCEGNFIQPTFITDYPKEMSPLTKEHRDNP DLTERFELMVCGKEIANAYSELNDPIDQRERFVAQMELAQKGDDEANGIIDEDFLRALEYGMPPTSGLGIGMDRLIMFLT NNASIQEVLFFPQMRPEVKPLAISDDAKTIVELLKVEDNQTLALLKEKSGLSGKKWDASMKELTKAGLTKVVVEGESKTV VLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-96 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004942705.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-96 | 44 |
