Gene Information

Name : FCOL_09570 (FCOL_09570)
Accession : YP_004942516.1
Strain : Flavobacterium columnare ATCC 49512
Genome accession: NC_016510
Putative virulence/resistance : Resistance
Product : major facilitator superfamily (MFS) permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2240717 - 2241931 bp
Length : 1215 bp
Strand : -
Note : COG0477 Permeases of the major facilitator superfamily

DNA sequence :
ATGAAGAAAAGTCAAAAACAAGCGGCTATAGGTTTTATTTTTATCACCTTATTAATTGATGTGATAGGTTTAGGAATCAT
TATTCCAGTAACCCCAAAGTTAATTCAAGAACTCATACACGGTAATGTAAGCGATGCCGCACAATATGGAGGTTGGCTTA
CTTTTGCGTATGCTTTTACGCAGTTTTTGTTTTCGCCCTTGGTAGGAAATTTGAGTGATAAATACGGTCGCCGTCCTGTA
TTATTGCTTTCACTTTTTGGATTCAGTTTGGATTATCTGTTATTGGCTTTTGCACCCACCATCAGTTGGTTATTCATCGG
ACGCATATTGGCGGGTATTACAGGGGCTAGTATCACGACCGCTTCTGCATATATCGCAGACATTAGCAACGATGAAAATC
GCGCCAAGAATTTCGGAATGATTGGAGCCGCTTTTGGTTTAGGATTTATTATTGGTCCCGTTATTGGAGGCTTGTTAGGG
CAATACGGGGCACGTATTCCTTTCTATGCCGCCGCGGTTTTATGTTTACTCAACTTTTTATATGGTTATTTCATACTTCC
AGAATCTTTATCCAAAAAACACCGTAGAGCCTTCGATTGGACCAGAGCTAATCCGATAGGTGCTTTTATTAGTTTAAAAA
AATATCCAAAACTGATTGGATTAACCCTTGCCGTGTTCTTGCTGCATACGGCTTCTCATGCAGTGCAAAGTAATTGGAGT
TATTTTACCATGTATCAATTTCATTGGGATGAAACCATGATAGGGTTATCCTTAGGCGTAATAGGTTTATTAGTCGCGCT
AGTACAAGGTGGTTTGATTCGATGGATAAATCCAAAGCTAGGGAATGTAAAAAGTATCTATGTAGGCATGGCTTTGTATA
CGATAGGTATGTTTCTTTTTGGTTTTGCCAGCCAAAGCTGGATGATGTTTGCCTTCCTGATTCCGTATTGTCTTGGTGGC
ATAGCAGGACCGGCATTACAAGCGGTAATTGCAGGGCAAGTGCCCGCAAACGAACAGGGAGAAATACAAGGTACCTTGAC
GAGTTTGATTAGTGCTTCAGCTATTATAGGACCGCCCATCATGTCGAGTGTATTTTATTATTTTACTCAAGAGAGTAACG
CGCATTCTTTTGCAGGTGCTCCTTTTATTTTGGGAGGCTTTGGTATGTTATTAAGTACACTAATGGCTTATGTGTCGTTA
AAAAAGCATCATTAA

Protein sequence :
MKKSQKQAAIGFIFITLLIDVIGLGIIIPVTPKLIQELIHGNVSDAAQYGGWLTFAYAFTQFLFSPLVGNLSDKYGRRPV
LLLSLFGFSLDYLLLAFAPTISWLFIGRILAGITGASITTASAYIADISNDENRAKNFGMIGAAFGLGFIIGPVIGGLLG
QYGARIPFYAAAVLCLLNFLYGYFILPESLSKKHRRAFDWTRANPIGAFISLKKYPKLIGLTLAVFLLHTASHAVQSNWS
YFTMYQFHWDETMIGLSLGVIGLLVALVQGGLIRWINPKLGNVKSIYVGMALYTIGMFLFGFASQSWMMFAFLIPYCLGG
IAGPALQAVIAGQVPANEQGEIQGTLTSLISASAIIGPPIMSSVFYYFTQESNAHSFAGAPFILGGFGMLLSTLMAYVSL
KKHH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tetA(A) AGK07027.1 TetA(A) Not tested SGI1 Protein 1e-42 42
tetA(A) AGK07085.1 TetA(A) Not tested SGI1 Protein 1e-42 42
tetA YP_006098396.1 tetracycline resistance protein Not tested Tn2411 Protein 2e-42 42
tetA(A) ACK44537.1 TetA(A) Not tested SGI1 Protein 1e-42 42
tetA CAJ77066.1 Tetracycline resistance protein Not tested AbaR1 Protein 9e-43 42
tetA(A) ACN81011.1 TetA(A) Not tested AbaR5 Protein 1e-42 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease Y19114.gene.p01 Protein 7e-42 43
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease AY264780.2.gene3.p01 Protein 3e-44 43
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease NC_011586.7045189.p0 Protein 1e-42 42
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease CP001485.1.gene2821. Protein 5e-43 42
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease AF534183.gene.p01 Protein 6e-43 42
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease NC_010410.6002597.p0 Protein 5e-43 42
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease AF090987.gene.p01 Protein 4e-34 42
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease X75761.gene.p01 Protein 7e-43 41
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease Y19116.gene.p01 Protein 1e-30 41
FCOL_09570 YP_004942516.1 major facilitator superfamily (MFS) permease L06940.gene.p01 Protein 3e-31 41