Gene Information

Name : tcpE (Vch1786_I0342)
Accession : YP_004936506.1
Strain :
Genome accession: NC_016445
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis protein E
Function : -
COG functional category : N : Cell motility
COG ID : COG1459
EC number : -
Position : 375307 - 376164 bp
Length : 858 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAGTAATTCATCACTAACGGATGCCTTAACTGGACTAATACCAGATAAAGAAGTTTTGATGATTAATGTTGCAGA
AAACTCAGGTAAGATTTCGAGTGGTATTGCTGCAATACGCAAAAACATTATCGATGCAGATGAGATCAAATCTAAAGCTA
TCTCATCTATGATCACGCCTAGCGTGATGCTTATCGTGACTATGGTTGTTATTGCTGGCTATTCAGTAAAAGTATTTCCC
ACATTTGAGTCTGTACTTCCTGTGAGCCGGTGGCCCGGTGTTACCCAAGCACTTTATAACCTTGGATTTTCATTGTATGA
AGGCTTGTGGATCAAAGTTCTTATTTTTGTCGCTATCTTCATTACGATTTTAGTTTTTATGTCTAAAAACATTACAGGGA
ATTTCAGAGATGGTTTTTTAGATAAGCTGCCACCTTTTAATTTTGTAAAGCATATTGCAGCAACAGAATTTTTGGCCAAT
ATGTCCATGTTGCTAGATAGTCGAGTCCCATTTAAAGAAGGTCTGGACATTGTCGATCATAAAACGACACGCTGGCTCTC
CTCACATTTGCAAAGAATGAAAGCTAACATGCAAGAAGGGCTAGACTACAAACAGGCTCTCGACACCAATTTACTAGATA
AAAAAATGCTCCTGACAATGGCTGTTTATTCAGAACTACCTAATTTTTCGGATGTAATGCAAAAATTAGCTATTGAAGCC
AATATAAATCTACATAAAAAAATTGCCACTTTAGCAGGGGTAATGAAAAATATTTCACTAATAACGTTGGCGTTGTCTGT
GATTTGGATCTTCGGTGCGATCTTTTCGCTCGTTGATAAACTAAGTTCATCTTTATAG

Protein sequence : 
MKSNSSLTDALTGLIPDKEVLMINVAENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVVIAGYSVKVFP
TFESVLPVSRWPGVTQALYNLGFSLYEGLWIKVLIFVAIFITILVFMSKNITGNFRDGFLDKLPPFNFVKHIAATEFLAN
MSMLLDSRVPFKEGLDIVDHKTTRWLSSHLQRMKANMQEGLDYKQALDTNLLDKKMLLTMAVYSELPNFSDVMQKLAIEA
NINLHKKIATLAGVMKNISLITLALSVIWIFGAIFSLVDKLSSSL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tcpE YP_001216317.1 toxin co-regulated pilus biosynthesis protein E Virulence VPI-1 Protein 3e-129 100
tcpE AAK20763.1 toxin-coregulated pilus biosynthesis protein E Virulence VPI Protein 2e-129 100
tcpE AAK20793.1 toxin-coregulated pilus biosynthesis protein E Virulence VPI Protein 2e-129 100
tcpE CAA45463.1 - Virulence VPI Protein 2e-129 100
VC0836 NP_230484.1 toxin co-regulated pilus biosynthesis protein E Virulence VPI-1 Protein 3e-129 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tcpE YP_004936506.1 toxin co-regulated pilus biosynthesis protein E VFG0099 Protein 1e-129 100