Gene Information

Name : tcpD (Vch1786_I0339)
Accession : YP_004936503.1
Strain :
Genome accession: NC_016445
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis protein D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 372371 - 373192 bp
Length : 822 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGATTAGCAGTTTGAAGAAGGGAAGCAATTTCAGTATTAATATAAAAAATATAAAGCTTGATAAAAAATTGTTAGT
GGCAATTATTTTTTTAGTTTTATCAATACTGGGAGGTGGAGCCTATTTATACTATGAAAATGAGAAAACGAAAAAGTTAG
AGCAGGCAAGATTACAGAAAATTCAAAAAGAGAACTCTGACAAACAAACCTATTTGTCAGATTTTAAATCGGCTTTTGAA
GGTCTTGATTACCAAGCGCTAACTGGTTTTTATGATGTACTCAGATCTGATATCGATTTTTTCAGGGTAAATAATTGGTT
ATTAGATGTAATGGACTGTAATGTTAACTGTAATTTAGCCTTTAAACGAGGAAGCTTTGACACCTTTACTTATTTAGAAA
TGAATCGAAATGGAGCTGTTATAAAACCACAGTTCGACCAGAATAAGCTCCAGTTTGCAAATGTGGATTATATATCTGGT
TTTCGTTCTATTTATCTCAAAGATCTCACTGAGCAAGAGAGAGATAAGAGTGAAAATATCATTGAACAGTGCTCAACAAA
ACTTTCTGAACTGTATAATTTGCAGTTGTTAATGAAAGAACAGGTGAAATTTAAAATAAATCTTCCTAGGAATGTAACTT
CAATATCGGGTTATGACTGGGTAAAAAATAGTGACATTAAATTCGGTTCTATTGAAATTGAAAATATGCCAGAGAAAAAC
TTGGGTCTGATGAAAAATATTATGAATAATAGTATGATGATTACGTCTATCTCTTTGCAAAATTCAAGTTTTAAATCCAA
GTTAAATTATTACTGCTATTAA

Protein sequence : 
MKISSLKKGSNFSINIKNIKLDKKLLVAIIFLVLSILGGGAYLYYENEKTKKLEQARLQKIQKENSDKQTYLSDFKSAFE
GLDYQALTGFYDVLRSDIDFFRVNNWLLDVMDCNVNCNLAFKRGSFDTFTYLEMNRNGAVIKPQFDQNKLQFANVDYISG
FRSIYLKDLTEQERDKSENIIEQCSTKLSELYNLQLLMKEQVKFKINLPRNVTSISGYDWVKNSDIKFGSIEIENMPEKN
LGLMKNIMNNSMMITSISLQNSSFKSKLNYYCY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tcpD AAK20760.1 toxin-coregulated pilus biosynthesis protein D Virulence VPI Protein 6e-115 100
tcpD AAK20790.1 toxin-coregulated pilus biosynthesis protein D Virulence VPI Protein 6e-115 100
VC0833 NP_230481.1 toxin co-regulated pilus biosynthesis protein D Virulence VPI-1 Protein 5e-115 100
tcpD YP_001216314.1 toxin co-regulated pilus biosynthesis protein D Virulence VPI-1 Protein 5e-115 100
tcpD CAA45460.1 - Virulence VPI Protein 1e-114 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tcpD YP_004936503.1 toxin co-regulated pilus biosynthesis protein D VFG0096 Protein 2e-115 100