Gene Information

Name : tcpR (Vch1786_I0338)
Accession : YP_004936502.1
Strain :
Genome accession: NC_016445
Putative virulence/resistance : Virulence
Product : toxin co-regulated pilus biosynthesis protein R
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 371913 - 372368 bp
Length : 456 bp
Strand : +
Note : -

DNA sequence : 
ATGACTAGCATATGGTTACATGAGTCAGATTTTAGATATGTTAACTTAGATGTAGAAAGATACCAAAAAAAATATCGTTT
GACATTGACTAATGGAAATAAGTACGTATTTATTAAAGATAAAGAAGATATATCTGATGTTAATCCATTTATCCCTTATA
TTCTCATGGAAGAAGGAATGAATAATGTATTAGTAAAATCAGATGATTACAAAGATATCCTCATTTATCAAGGCGTCAAT
ATTCAATGTCTGGATTTTCTTAATGATAATGATATATCCGTTGAGAAATTAGTTGATTTTGAAACAGTAGAACTTAAAGC
AGATGAGCTAAATAAAATAAAAGCACGAAGGTTGGATGCACAACTGATTGAAGATGAAGTCAAAAATAATAAAGTGTTTA
TTATTGGATTCATTGCTATTGTAATAATTAGTATCGGCGTATTTTGGTTAATGTGA

Protein sequence : 
MTSIWLHESDFRYVNLDVERYQKKYRLTLTNGNKYVFIKDKEDISDVNPFIPYILMEEGMNNVLVKSDDYKDILIYQGVN
IQCLDFLNDNDISVEKLVDFETVELKADELNKIKARRLDAQLIEDEVKNNKVFIIGFIAIVIISIGVFWLM

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tcpR AAK20759.1 toxin-coregulated pilus biosynthesis protein R Virulence VPI Protein 4e-54 100
tcpR AAK20789.1 toxin-coregulated pilus biosynthesis protein R Virulence VPI Protein 4e-54 100
tcpR CAA45459.1 - Virulence VPI Protein 4e-54 100
VC0832 NP_230480.1 toxin co-regulated pilus biosynthesis protein R Virulence VPI-1 Protein 6e-54 100
tcpR YP_001216313.1 toxin co-regulated pilus biosynthesis protein R Virulence VPI-1 Protein 6e-54 100

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tcpR YP_004936502.1 toxin co-regulated pilus biosynthesis protein R VFG0095 Protein 2e-54 100