Gene Information

Name : epsF (Vch1786_I2225)
Accession : YP_004938363.1
Strain :
Genome accession: NC_016445
Putative virulence/resistance : Virulence
Product : general secretion pathway protein F
Function : -
COG functional category : N : Cell motility
COG ID : COG1459
EC number : -
Position : 2372605 - 2373825 bp
Length : 1221 bp
Strand : -
Note : -

DNA sequence : 
ATGGCCGCGTTTGAATACAAAGCGCTGGATGCCAAGGGACGCCATAAAAAAGGCGTGATTGAGGGCGATAATGCACGTCA
GGTGCGTCAGCGCCTGAAAGAGCAAAGCCTAGTGCCGATGGAGGTGGTGGAGACTCAAGTCAAAGCCGCGCGCAGTCGCA
GCCAAGGTTTTGCGTTTAAGCGTGGGATCAGTACGCCGGATCTGGCGCTGATCACTCGCCAATTGGCGACTTTAGTTCAA
TCCGGTATGCCACTGGAAGAGTGTTTACGCGCGGTTGCCGAGCAGTCGGAAAAACCGCGGATTCGCACCATGTTGGTGGC
GGTGCGCGCTAAAGTGACCGAAGGTTACACCCTCTCTGATAGTCTTGGCGATTATCCGCACGTGTTTGATGAGCTGTTTC
GTTCTATGGTTGCGGCGGGCGAAAAATCTGGCCACCTCGATTCCGTTCTCGAACGTTTAGCTGACTACGCCGAAAACCGC
CAGAAAATGCGCTCTAAACTGCAACAGGCCATGATTTACCCTGTGGTGCTGGTGGTGTTTGCGGTCGGTATCGTGGCGTT
TTTGTTGGCAGCGGTAGTGCCGAAAATCGTGGGTCAGTTTGTGCAAATGGGGCAAGCCTTGCCGGCATCGACTCAGTTTC
TGCTTGATGCCAGCGATTTCCTGCAACATTGGGGGATTTCGCTGCTGGTCGGTCTCTTGATGCTGATTTATCTGGTGCGC
TGGTTGCTGACCAAGCCCGATATTCGTTTGCGTTGGGATCGCCGAGTGATTTCCTTGCCTGTGATTGGCAAGATTGCACG
CGGTCTGAATACTGCGCGCTTTGCGCGTACGCTGTCGATCTGTACCTCAAGTGCAATCCCGATTCTGGATGGTATGCGCG
TTGCGGTGGATGTGATGACCAATCAGTTTGTGAAACAGCAAGTGTTGGCTGCGGCCGAAAACGTACGCGAAGGCTCTAGC
CTGCGCAAAGCGCTAGAGCAGACCAAGCTCTTTCCTCCCATGATGCTGCACATGATTGCCAGTGGTGAGCAGAGTGGAGA
ATTGGAAGGCATGTTGACGCGCGCTGCGGATAACCAAGACAACAGTTTTGAATCAACGGTCAACATCGCGCTTGGCATTT
TTACCCCGGCCTTGATTGCCTTGATGGCGGGGATGGTGCTGTTTATTGTGATGGCGACCCTGATGCCGATTTTGGAAATG
AATAACTTAATGAGTCGTTAA

Protein sequence : 
MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGISTPDLALITRQLATLVQ
SGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENR
QKMRSKLQQAMIYPVVLVVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR
WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQFVKQQVLAAAENVREGSS
LRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM
NNLMSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspF YP_854405.1 type II secretion protein GspF Not tested PAI I APEC-O1 Protein 3e-96 55
gspF CAE85232.1 GspF, hypothetical type II secretion protein Not tested PAI V 536 Protein 4e-95 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
epsF YP_004938363.1 general secretion pathway protein F VFG2049 Protein 1e-93 56
epsF YP_004938363.1 general secretion pathway protein F VFG0181 Protein 3e-89 49
epsF YP_004938363.1 general secretion pathway protein F VFG1870 Protein 1e-76 42