Gene Information

Name : Vch1786_I1273 (Vch1786_I1273)
Accession : YP_004937428.1
Strain :
Genome accession: NC_016445
Putative virulence/resistance : Virulence
Product : C4-dicarboxylate-binding periplasmic protein
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1638
EC number : -
Position : 1400393 - 1401358 bp
Length : 966 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAACCATTAATAAGATTACTATCGCAATACTTACTTTGAGTGCTGCTGCTTCTGTCAATGCTGCGACGACTTTAAA
GATGGGGATGCAAGCTTCTGTGGGGTCTGTAGAGTATAACTCGGCAAAAATGCTTGCCGACACATTAGAAGAAATGAGTC
AAGGAGAGATCAAACTCGCTTTGTACCCAAGCGCCCAGCTTGGTGATGATCGTGCCATGCTTCAGCAATTGACGCTGGGA
GATCTCGATATAACTTATGCTGAGTTTGGTCGTATGGGGCTTTGGATACCGCGAGCAGAAGCGGTCATGCTCCCTTATGT
CGCGAAAGATTTTGACCATTTACGCCGCATGTTTGAATCTGACTTTGGTCAAGGTGTTCGTGATGAAATGCTCCAGAAGT
TCAACTGGCGTGCTTTGGACACTTGGTATAACGGTACCCGTGAAACCACTTCAAACCGTCCCCTCAATTCGATTGAAGAT
TTTAAAGGGTTAAAACTTCGAGTCCCGAATGCTAAGCAAAACCTCAACTATGCAAAGCTGTCTGGTGCCTCGCCAACCCC
GATGTCATTCTCTGAAGTTTATTTAGCGCTGCAGACCAATGCCGTAGATGGGCAAGAAAACCCGCTACCAACAATTAAAA
CAATGAAGTTCTATGAAGTGCAAAAGAACTTAGCCATGACACATCATATTGTTAACGATCAAATGGTGATCATTTCGGAA
TCTACTTGGCAGAAGCTTTCTGATACGGATAAAGACATCATTCAGAAAGCCGTGCAGAAAGTGGGAGATGCTCATACACA
GACCGTTAAAACTCAAGAGGCAGAATTGGTCTCCTTCTTCAAGAGTGAAGGTATCAACGTGACTTACCCAGATCTGGAGC
CATTCCGAGAAGCGATGCAACCACTTTACAAGGAGTTTGACAGTAACATCGGTCAGCCGATTGTGTCGAAATTGGCAGCA
ATGTAA

Protein sequence : 
MKTINKITIAILTLSAAASVNAATTLKMGMQASVGSVEYNSAKMLADTLEEMSQGEIKLALYPSAQLGDDRAMLQQLTLG
DLDITYAEFGRMGLWIPRAEAVMLPYVAKDFDHLRRMFESDFGQGVRDEMLQKFNWRALDTWYNGTRETTSNRPLNSIED
FKGLKLRVPNAKQNLNYAKLSGASPTPMSFSEVYLALQTNAVDGQENPLPTIKTMKFYEVQKNLAMTHHIVNDQMVIISE
STWQKLSDTDKDIIQKAVQKVGDAHTQTVKTQEAELVSFFKSEGINVTYPDLEPFREAMQPLYKEFDSNIGQPIVSKLAA
M

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 3e-143 100
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 3e-143 100
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 5e-143 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Vch1786_I1273 YP_004937428.1 C4-dicarboxylate-binding periplasmic protein VFG1112 Protein 1e-143 100