|
Name : Tlie_0903 (Tlie_0903) Accession : YP_004932733.1 Strain : Thermovirga lienii DSM 17291 Genome accession: NC_016148 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 958015 - 959286 bp Length : 1272 bp Strand : + Note : PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase; COGs: COG0172 Seryl-tRNA synthetase; InterProIPR002317: IPR006195: IPR015866: IPR002314: IPR 018156; KEGG: aco:Amico_09 DNA sequence : ATGCTTGATATTCGGCTTTTTAGGGATAACCTAGAGGGTTTGAAGCAAATGCTCAAGAATAGGGGCTATGATTATCCTGT CGAAGAGGTTGCATCTTTGGATGAAGAAAGACGGCGGATATTGGTTGAGGTAGAGGAGCTAAAGGCTGAACGTAATAGAG GCTCAAAAGAAGTTGCAGAGGCCAAGGCGAAGGGAATGGATGTAACTCATCTGAAGGAACGAATGAAAAGCATAGGAGCA AAGATAAAGGAGCTTGATGAAAAGTTATCTAAGATAGAGAAAAAACTAGAGGAACATCTGCTCAGGATCCCCAATTGGCC TCATTCATCCGTGCCTATAGGCCCTGATGAGACATATAACGTGGAAATCAGAAGGTGGGGGGAACCGAAAGAGTTTGAAT TCCCTCCTAAGCCCCATTGGGAGATAGGAGAGAGTCTGGGGATATTGGATTTTCAGAGGGGAGTAATGTTGGCGGAAAGC CGCTTTACTGTTTTGGTAGGTCTTGGTGCTAAGCTGGAGAGGGCCCTGATAAATTTCATGTTGGACCTGCACACCAAGGA GCACGGCTTTAAAGAGATAGAGCCTCCATTTTTGGTTAACTCGGAAACAATGCAGGGTACCGGACAATTGCCCAAGTTTG CAGATGACCTATACTCATGTGCTGGTGAAGATCTTTGGCTCATTCCAACCGCTGAAGTTCCTTTAACTAACATGCATAGA GGAGAGATCCTGAGTGAAAGCTCTCTGCCCTTATACTATACTGCTTACACACCATGTTTCCGCAGGGAGGCAGGAAGCCA CGGTAGAGACGTGCGAGGTATGTTAAGGCAGCATCAGTTTGACAAAGTTGAGCTTGTCAAAATTTGCACCCCAGAAAAGA GTTATGAGGAATTGGAAAGCCTAACGCAAGCTGCAGAAAGGGTATTGCAGCTTCTTGAACTTCCCTATCGTGTAGTTTGT CTTTCCACTGGTGATATGGGCTTTGCCGCCAGCAAAACGTACGACATAGAGGTGTGGCTACCTTCGCAGGGGAAATACAG AGAAATTAGCTCCTGTAGTAATTGCGAGGACTTTCAGGCACGGCGAATGAACATGAGGTATAAGCCATCAGAGGGAGGTA AGAGCCGTTTTGTACATACTTTGAATGGTTCTGGCGTCGCAGTGGGACGCTGCCTGATAGCTATAATGGAGAACTACCAG CAAGAGGACGGAAGCTTCATTGTCCCCGAGGTTTTGAGGCCATACATGGGGGGCATAGAGCGAATAGGGTAG Protein sequence : MLDIRLFRDNLEGLKQMLKNRGYDYPVEEVASLDEERRRILVEVEELKAERNRGSKEVAEAKAKGMDVTHLKERMKSIGA KIKELDEKLSKIEKKLEEHLLRIPNWPHSSVPIGPDETYNVEIRRWGEPKEFEFPPKPHWEIGESLGILDFQRGVMLAES RFTVLVGLGAKLERALINFMLDLHTKEHGFKEIEPPFLVNSETMQGTGQLPKFADDLYSCAGEDLWLIPTAEVPLTNMHR GEILSESSLPLYYTAYTPCFRREAGSHGRDVRGMLRQHQFDKVELVKICTPEKSYEELESLTQAAERVLQLLELPYRVVC LSTGDMGFAASKTYDIEVWLPSQGKYREISSCSNCEDFQARRMNMRYKPSEGGKSRFVHTLNGSGVAVGRCLIAIMENYQ QEDGSFIVPEVLRPYMGGIERIG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 7e-96 | 56 |
