Gene Information

Name : Tlie_1827 (Tlie_1827)
Accession : YP_004933635.1
Strain : Thermovirga lienii DSM 17291
Genome accession: NC_016148
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : -
Position : 1900949 - 1902829 bp
Length : 1881 bp
Strand : -
Note : PFAM: Polysaccharide biosynthesis protein; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR003869; KEGG: swo:Swol_0128 hypothetical protein; PFAM: polysaccharide biosynthesis protein CapD; SPTR: uncharacterized protein

DNA sequence :
TTGAATGGAGCAGCAAGAATTATAATCCTCATACTCATTGACAGCCTGTTAATAGCAGCAGCCCTCATGACGGGGCTTCT
CCTTCGCTTTGAAGGAGATATACCGGGCCAGTATGTATCAGCTTTTCGTTATCTCCTTCCCTATTACATCCTGGTAAACA
TAATATGTTTTTACCTGGGAAGGCTTTACCACCGCATGTGGCGGTATGCGAGCATAAGGGAGCTGTACGGCCTTTTAAAG
GCAGCCACGGCCGGGGCAGTAATAATGGTGGTCCTTATTTATGCTTTGGGCTTTCCCACCCTGCCGCGCAGTGTATATAT
ACTTTCCTGGTTTTTCATAATCGCGTTTGTAGGCAGTTCCCGTCTGGGATGGCGGCTTGTGCGGGATATGATGCTGGCAA
ACAGGAATTCTCCATCTTCCCGCGTTCTAATTATAGGAGCCGGCGATGCAGGTGCCATGGTGGCAAGGGAAATAATGAAC
AACAGGAAGCTTAACCTAGAGGCGGTAGGTTTCATCGATGATAATCCCATGAAGCAGAAGCTCAGCATTTACGGCATCCC
GGTTTTAGGCACCAGGGAAGCAATACCCAGGATAGTAAGAGAGTATCACATAGATGAGATAATAATAGCCATGCCTTCCG
CAGGAGGCAGGACCATCCGGGAGATTAACCAGATATGCCGGCAGATTGGGGCGAAGGCCCGCATATTCCAGGGAGCCGAT
ACTCTCTTGGGCAGAAAATACCGCATAAAAGAAATAGAACTGGATGACCTACTGAAAAGGGAGCCGGTAAAGCTAAACCT
GGATGAAATAGCCGGCTATCTTAAGGATAAAACTGTTCTGGTAAGCGGGGCCGGGGGCTCCATCGGCTCTGAACTGTGCC
GGCAGATAGCCGTAAATAAACCGAAAAGGCTCATTCTCCTTGACTGCTCTGAAAATGACCTGTTTGAGATTGAAAATGAG
CTGAGGGAAAATCTCCCTGCCCTTGATATCGTGCCGGAGCTGGCAGATATAAGAGATAAGGAACGGCTTATCCATATATT
CGGCACCTGCAGGCCGCAGGTAGTATTCCATGCGGCTGCCTACAAACATGTGCCGATGATGGAAAAACACCCCCTGGAAG
CGGTAAAAAACAACATCTTCGGTACCCGCAACCTGGCAGAAGCCGCGGATCGCTTTCAGTCGGAAACCTTTATCCTTATC
TCGACCGACAAGGCGGTAAACCCGTCTAACGTCATGGGAGCTACCAAAAGGGCAGCCGAACTTATAATCCAGGAGATGAA
CCATAAGAGCCAGACCACTTTTGCTGCCGTTCGTTTCGGCAATGTACTGGGCAGCAGGGGGAGTGTGGTTCCCATATTCA
GAAAGCAGATTGAAAAAGGCGGACCGGTCACCGTAACCCATCCGGAAATGACCCGTTACTTCATGACTATACCGGAAGCG
GTCCAGCTGGTAATCCAGGCAGGAGCCATGGCCATGGGAGGGGAAATATTTGTCCTGGACATGGGAGAACCCGTAAGAAT
AATGGATCTGGCATATGACATGATAAGGCTCGTGGGCTACCAGCCAGGAGAAGATATTGAAATAAAGATTACCGGCATAA
GGCCGGGAGAAAAACTGCATGAAGAGCTCTTTGCTGCCCGGGAGCAGATAGAGGCTACCCGGCATGAAAGGATATTCCTC
TGCCATCTGCCTCCTCAAAATCTTAATATCCTGAACATGATAGACGAATGGGAAAAAACCATAACCAGAGCCAGAAGACT
GGACAGGAAAGCAGTAATGGATTTCATACATTCCCTTATCCCGGAATTCCAGGCGGCAGGCGAAGTGGCCGCAGCCGATG
AGCGAAAGGAGGCAGAAGGCAGGAAATGGGGGATGGGGTAG

Protein sequence :
MNGAARIIILILIDSLLIAAALMTGLLLRFEGDIPGQYVSAFRYLLPYYILVNIICFYLGRLYHRMWRYASIRELYGLLK
AATAGAVIMVVLIYALGFPTLPRSVYILSWFFIIAFVGSSRLGWRLVRDMMLANRNSPSSRVLIIGAGDAGAMVAREIMN
NRKLNLEAVGFIDDNPMKQKLSIYGIPVLGTREAIPRIVREYHIDEIIIAMPSAGGRTIREINQICRQIGAKARIFQGAD
TLLGRKYRIKEIELDDLLKREPVKLNLDEIAGYLKDKTVLVSGAGGSIGSELCRQIAVNKPKRLILLDCSENDLFEIENE
LRENLPALDIVPELADIRDKERLIHIFGTCRPQVVFHAAAYKHVPMMEKHPLEAVKNNIFGTRNLAEAADRFQSETFILI
STDKAVNPSNVMGATKRAAELIIQEMNHKSQTTFAAVRFGNVLGSRGSVVPIFRKQIEKGGPVTVTHPEMTRYFMTIPEA
VQLVIQAGAMAMGGEIFVLDMGEPVRIMDLAYDMIRLVGYQPGEDIEIKITGIRPGEKLHEELFAAREQIEATRHERIFL
CHLPPQNLNILNMIDEWEKTITRARRLDRKAVMDFIHSLIPEFQAAGEVAAADERKEAEGRKWGMG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 3e-102 48
cap1D AAA64643.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-97 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tlie_1827 YP_004933635.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 7e-99 48
Tlie_1827 YP_004933635.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 2e-82 43