Gene Information

Name : Tlie_1315 (Tlie_1315)
Accession : YP_004933142.1
Strain : Thermovirga lienii DSM 17291
Genome accession: NC_016148
Putative virulence/resistance : Unknown
Product : short-chain dehydrogenase/reductase SDR
Function : -
COG functional category : I : Lipid transport and metabolism
COG ID : COG1028
EC number : -
Position : 1383801 - 1384565 bp
Length : 765 bp
Strand : -
Note : PFAM: short chain dehydrogenase; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR002198: IPR020904; KEGG: bbe:BBR47_57630 short chain dehydrogenase; PFAM: short-chain dehydrog

DNA sequence : 
ATGAGGGAAGAACTTTTCAGTTTGAGTGGTAAGGTTGCAGTTGTAACAGGAGCTGCCTCAGGTATAGGAAGAGGCTGCGC
GGAGTTTCTTCATGAGATGGGGGCAGCAGTTGCTATTGTGGATGTCTCCCGGGATAAAGGAGAAGAGGTTGCGCTAAAAC
TTAAGGATCGAGCAAAGTACTTTTTTTGCGATGTTACTGCAGAGCAAAGCTGCGCAGATATGGTGCAAAATGTCATAGAC
CACTTTGGAGGCATCGACATCTTGGTGAATTGCGCGGGCGTTATTCGGCGGAAAAGCGTAGTTGAACTTGAGGAAAAAGA
TTGGGATGCAGTGTTGGATGTGAGCCTCAAAGGGACTTTCCTGGTGTCAAAGTACGTAATACCCCAAATGGAAAAAAGAG
GCGGTGGCAGCATCGTTAACATAGGTTCCGGATGGGGTATCAAGGGAGGGCCGAAAGCAGCGGCGTACTGTGCCGCAAAA
GGAGGAGTGGTCAACCTCACTAGGGCCATGGCGATAGACCATGGGCCTCAGAACATTCGGGTAAATTGCGTAAGCCCAGG
AGACACCGATACTCCCCTTTTGAGGGACGAGGCGAGACAACTGGGGATAGACGAGAATAAATGGCTTGAAGAGAGCGCTC
AGAGGCCTCTGGCTAGGTTAGGTGAACCCCTGGATATAGCTATGGCCGTTTACTTCCTTGCTAGCGATCTATCAAGATGG
ATAACAGGAGCCAACCTTGTCGTAGACGGCGGCGGAACGGCTTAA

Protein sequence : 
MREELFSLSGKVAVVTGAASGIGRGCAEFLHEMGAAVAIVDVSRDKGEEVALKLKDRAKYFFCDVTAEQSCADMVQNVID
HFGGIDILVNCAGVIRRKSVVELEEKDWDAVLDVSLKGTFLVSKYVIPQMEKRGGGSIVNIGSGWGIKGGPKAAAYCAAK
GGVVNLTRAMAIDHGPQNIRVNCVSPGDTDTPLLRDEARQLGIDENKWLEESAQRPLARLGEPLDIAMAVYFLASDLSRW
ITGANLVVDGGGTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96227.1 putative short-chain type regulator Not tested T-PAI Protein 9e-33 42
unnamed AAT96098.1 putative short-chain type regulator dehydrogenase Not tested T-PAI Protein 9e-33 42
unnamed AAT96175.1 putative short-chain type regulator Not tested T-PAI Protein 8e-33 42
unnamed AAT96054.1 putative short-chain type regulator Not tested T-PAI Protein 3e-33 42
unnamed AAT96115.1 putative short-chain type regulator Not tested T-PAI Protein 1e-33 41