|
Name : Tlie_1302 (Tlie_1302) Accession : YP_004933129.1 Strain : Thermovirga lienii DSM 17291 Genome accession: NC_016148 Putative virulence/resistance : Unknown Product : ATP-dependent DNA helicase RecG Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1200 EC number : - Position : 1370641 - 1372722 bp Length : 2082 bp Strand : - Note : PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; OB-fold nucleic acid binding domain; TIGRFAM: ATP-dependent DNA helicase RecG; COGs: COG1200 RecG-like helicase; InterProIPR004365: IPR011545: IPR001650: IPR014021: IPR 004609: IPR014001; DNA sequence : TTGGAAAAGTTGAGAAAAATTGATCTTAGTTCTCCTATTCAGTACCTTAAGGGAGTAGGTCCAGTAAGGGCAAGAAAGTT TAGAAAGCTTGGGGTTGAAACTGTAGAAGATTTGCTGTGGTTTATGCCGAGAAGGTATGAGGATAGGAGCAAGTTATCGA ATTTGTCCTCCCTGGAACCAGGAGAGACAAAGGCCTTTTTGGCCCGTGTTGTAAGCATAGAAGAGAGGAAAGCCAAGAGA AGGAATCTTACTATCAGCACTGCTTTGCTCACTGATGGTTCATCATTTGTCCAGGCAGTTTGGTTCAATCGCCCAGGGTT GAAGAGTGTCTTAGAGCCTGGCACTAAAGTGGCTGTTTATGGAAAAATCGAAATAAGGGAAGGAATAAAACAGGTCAATA ACGGTGAATTTGAGGTGTTGGACGAGGATTCATCTCCCGAGAACGTGGGAATGATCGTGCCTGTATATCCCGGAACTCAG GGATTGGTTCAAAAGTGGATTAGGAAAATAGTGAAGGAAGCTTTGCGTTTGATAGAGGAAGAAGTGGAAGACCCTTTGCC CATAGACATCTTGACTAAATACGATTATCCCGACTTTTTCCGAGCTATTAAGGAAATGCACTTCCCAAGCTCCAGGGAGA GTTGGTTGGCTGCCCGTAACAGGTTGGCCTTCCAGGAGCTTTTCTTGTTGCAACTGGGACTTGCTGTGAGGAGAAGGTCT TACGTTGAGGACAATAAGGGACATAAATTCAACGTAAACGGTCCTTTGGTGGATGCGTTCATTCACAAAGTGCTACCCTT TAAGTTAACGGATGCCCAAAAAAGAGTGTTTTCAGAGATAAGGGATGATGTGTCGAAAGAAATACCAATGAACAGGCTTT TGCAGGGAGACGTAGGATCTGGTAAAACGGTTATTGCGATACTTTTCATGCTCTGTGCTATAGACAGCGGATATCAGGCT GCTTTTATGGCCCCTACCGAGGTTCTTGCCAAGCAGCATTTCGAAAAGATTCATAAATGGTTGACCCCCTTGGGAGTAAA GGTTTCTTTGTTGACAGGTTCTGTGCCTTCCGCAGAGAAAAGGATAATTTACGAGGAAGTTTCTAATGGATTGGTGAACA TCGTCGTAGGTACCCATGCCCTAATACAGGACAATTTGGCTTTCAGGAATCTAGGTGCTGTTGTCATAGATGAACAGCAT AGGTTTGGGGTATTGCAAAGGGGCATCTTGGCTGATAAGGGGGAACATCCCCATGTTCTGGTTATGACTGCGACTCCTAT TCCAAGGACTTTGACGCTTTCGGTTTATGGTGATTTGTCCGTGTCTGTCATAGATGAAATGCCGCCTGGCAGGAAAGATA TAATAACTAAAAGCGTGAAAAAGGAGCAGGAGTCAGAACTCTTAAGTTTTTTGAAAGAAGAGATAAAAGCAGGTGGGCAG GTCTACTGGATATGCCCTATGATAGATGAAAATGAGGAGTTGAGCATAGCGTCAGCAGAGAGTCGGTTTTCTCATTTGAG GGAGATATTTAAGGAAGAGACCGTTGCCCTTCTCCATGGAAAGAAACCCTATAGGGAGAAAGAACAGATAATGAGAGATT TCGAAAAGGGGCATATTGATGTTTTGGTGTCCACAACTGTTATAGAGGTGGGAATTGATGTGCCCAATGCGACTGTCATG GTGATTGAAGATCCGTGGAGGTTTGGACTATCGCAATTGCACCAGTTGAGGGGTAGGGTCGGCAGAGGCAATAAGCAGGG ATATTGTTTCCTTTTGGGCCGGCCGGACGATTATGATGGAAAAAGGAAGATTGCAGCAATGTGTTCCACTAACGATGGCT TCAAGATCGCTGAGGCGGACCTTGCCATAAGGGGGCCAGGTGAAGTGTGTGGAACAAGACAGCATGGAGTAACAGATTTT AGGGTTGCCAACTTGCTTCGTGACAGGAAAATACTTAACTTGGCCAGAAAAGAAGCTTTCTCTTTGATAGAAAAGGATCC CAAGCTGGAGGGATACCCCAAACTGAAAGAATTATTATTGAGACAGCTGGGAGATAAATTGGATTTGGTGATAACGGCAT GA Protein sequence : MEKLRKIDLSSPIQYLKGVGPVRARKFRKLGVETVEDLLWFMPRRYEDRSKLSNLSSLEPGETKAFLARVVSIEERKAKR RNLTISTALLTDGSSFVQAVWFNRPGLKSVLEPGTKVAVYGKIEIREGIKQVNNGEFEVLDEDSSPENVGMIVPVYPGTQ GLVQKWIRKIVKEALRLIEEEVEDPLPIDILTKYDYPDFFRAIKEMHFPSSRESWLAARNRLAFQELFLLQLGLAVRRRS YVEDNKGHKFNVNGPLVDAFIHKVLPFKLTDAQKRVFSEIRDDVSKEIPMNRLLQGDVGSGKTVIAILFMLCAIDSGYQA AFMAPTEVLAKQHFEKIHKWLTPLGVKVSLLTGSVPSAEKRIIYEEVSNGLVNIVVGTHALIQDNLAFRNLGAVVIDEQH RFGVLQRGILADKGEHPHVLVMTATPIPRTLTLSVYGDLSVSVIDEMPPGRKDIITKSVKKEQESELLSFLKEEIKAGGQ VYWICPMIDENEELSIASAESRFSHLREIFKEETVALLHGKKPYREKEQIMRDFEKGHIDVLVSTTVIEVGIDVPNATVM VIEDPWRFGLSQLHQLRGRVGRGNKQGYCFLLGRPDDYDGKRKIAAMCSTNDGFKIAEADLAIRGPGEVCGTRQHGVTDF RVANLLRDRKILNLARKEAFSLIEKDPKLEGYPKLKELLLRQLGDKLDLVITA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| recG | CAJ77039.1 | ATP-dependent DNA helicase | Not tested | AbaR1 | Protein | 1e-99 | 42 |
