Gene Information

Name : Tlie_0100 (Tlie_0100)
Accession : YP_004931943.1
Strain : Thermovirga lienii DSM 17291
Genome accession: NC_016148
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 108626 - 109393 bp
Length : 768 bp
Strand : +
Note : PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP; COGs: COG1338 Flagellar biosynthesis pathway component FliP; InterPro IPR005838: IPR005837; KEGG: tai:Taci_1319 flagellar biosynthetic protein FliP; PFAM: type III secretion system inner mem

DNA sequence : 
ATGACTTGTAATAAAAAGATTTTTTGGTTTCTTGTGGGAATATTGGTGTTGCATCTTTTGTGTGGGGAGGCAGCCTTTGC
TCAAGAAGTGCAAGGCCCTACTGTACCTTCTGTTTCCTTGAACATCAATGGCAACCAGCAAGACCTGCCTTTAACCATGC
AAGTTTTTCTTCTGGTTACTCTTCTCAGTCTTGCGCCAGCGTTGGCCTTGATGGTCACAAGCTTCACCAGAATTTTGGTT
GTTCTAGGTTTCCTCAGGAGTGCCATAGGGGTTCAGCAGTTGCCTCCCAACCAGGTGATTGTAACGTTGGCGATATTTTT
GACCCTTTTCATAATGCGGCCCGTGTGGGAGGAAGTGTACAAGGAGGCGTACATCCCTCTACAGGAGGGACAGATAACTA
CGCAGGAAGCCATGGATAGAACTTTGAAGCCTGTTAGGGAGTTTATGCTAAGTCAAACCAAGGAAAAGGAACTTTCCTTG
ATGATATCCCTTTCCGATTTGGAAAGGCCCAACACGCCCGAAGATGTTCCCACTCTTGTTTTGCTGCCGGCTTTCATGCT
CAGCGAACTTAAGACCGCCTTTCAAATGGGAGTGGTGCTTTTCGTTCCTTTTTTGGTCATCGACATGATAGTTTCAAGCG
TGCTCATGTCCATGGGCATGATAATGCTGCCGCCCATGTTGGTTTCCTTGCCTTTCAAGGTGCTGTTGTTCGTTCTTGCT
GACGGTTGGGACCTCGTGATAGTCAGCCTTGTAAAAAGTTTTAGGTAG

Protein sequence : 
MTCNKKIFWFLVGILVLHLLCGEAAFAQEVQGPTVPSVSLNINGNQQDLPLTMQVFLLVTLLSLAPALALMVTSFTRILV
VLGFLRSAIGVQQLPPNQVIVTLAIFLTLFIMRPVWEEVYKEAYIPLQEGQITTQEAMDRTLKPVREFMLSQTKEKELSL
MISLSDLERPNTPEDVPTLVLLPAFMLSELKTAFQMGVVLFVPFLVIDMIVSSVLMSMGMIMLPPMLVSLPFKVLLFVLA
DGWDLVIVSLVKSFR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-29 43
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 2e-29 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 2e-29 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-29 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-29 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-28 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-29 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-29 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 9e-29 41
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-28 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 9e-29 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tlie_0100 YP_004931943.1 flagellar biosynthetic protein FliP VFG2338 Protein 1e-49 55
Tlie_0100 YP_004931943.1 flagellar biosynthetic protein FliP VFG2494 Protein 3e-48 55
Tlie_0100 YP_004931943.1 flagellar biosynthetic protein FliP VFG2016 Protein 1e-42 50
Tlie_0100 YP_004931943.1 flagellar biosynthetic protein FliP VFG1259 Protein 8e-48 47
Tlie_0100 YP_004931943.1 flagellar biosynthetic protein FliP VFG0519 Protein 7e-30 43
Tlie_0100 YP_004931943.1 flagellar biosynthetic protein FliP VFG0044 Protein 4e-28 41