Gene Information

Name : DSC_05260 (DSC_05260)
Accession : YP_004929744.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Virulence
Product : Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 937985 - 939430 bp
Length : 1446 bp
Strand : -
Note : COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

DNA sequence : 
ATGAGCGACCCCCGTAGCGCCCTGATCGTCGATGACGAACGCGACATCCGAGAGCTGCTGACCCTGACCCTGGGTCGCAT
GGGCCTTCGGATCGACACCGCCGCCAATGTCGGCGAAGCCCGCGAGCTGCTGGCCCGCAACCCCTACGACCTGTGCTTCA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAGCTGGTCGAGGAGATCTCGCGCAATTTCCCCCGTACGCCGGTGGCC
ATGATCACCGCCTTCGGCAATGTCGAACTGGCGGTGGAGGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAACGTGCTGCGCGGCCTGGTCCGCCACGCGCTGGAGCTCAATAACAGCGAGCGCCCCGCGCCTGCGCCCGCCC
CGGCCCAGCACGCCATGCGCCTGCTCGGCGACTCGCCGGCCATGGCCGAGCTGCGCCAGACCATCGCCAAGGTCGCCCGC
AGCCAGGCCCCGGTCTACATCCTGGGCGAGTCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCATGAGCAGGGCGG
CCGCGCGGCCGGTCCCTTCATCCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACAAGCAGGGATTGTTCCAGGCGGCCAGCGGCGGCACCCTGTTCCTGGAC
GAGGTGGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAAGCCGTGCGCCCGGTCGGCGC
CTCCGGCGAGACCCAGGTGGACGTGCGGATCCTGTCGGCCACCCACAACGACCTGGGCGAACTGGCCCAGGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCGCCCCTGCGCGAACGCACCGGCGACCTGCCG
CTGCTGACCGGCGCCATCCTCACCCGCCTGGCCGGCCACCAGCAGCGCAGCGCGCCGCACCTGACCGCTGCCGCGCTGGA
GGCCCTGGCCCGCTATCCCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAGCGGGCCATGGCCATGGCCGACG
GCGAGGCCATCGACGCCGGCGACCTGCGCCTGCCCCAGGCCGAACGCCGCGCCCCAGCGCCATTGGCCGCCCTGCCACCC
GCGCAGGACCACGACCCGTTCCGCCCCAATCCCGGCCCGTTCGGCAGCCCGCCCCCGGCCAACGGCGCCCCGGCCGGCAA
CGGCGATGCCGAGGGCCCGCTGCCCTCCTACATCGAACAGATGGAACGCGCCGCCATCCACAAGGCCCTGGAAGACAACC
GCTGGAACAAGACCAAGGCCGCCGCCCAGCTGGGCATCACCTTCCGCGCCCTGCGCTACAAGCTCAAGAAGCTGGGCATC
GAGTAA

Protein sequence : 
MSDPRSALIVDDERDIRELLTLTLGRMGLRIDTAANVGEARELLARNPYDLCFTDMRLPDGNGIELVEEISRNFPRTPVA
MITAFGNVELAVEALKAGAFDFVSKPVDINVLRGLVRHALELNNSERPAPAPAPAQHAMRLLGDSPAMAELRQTIAKVAR
SQAPVYILGESGVGKELVARTIHEQGGRAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAASGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASGETQVDVRILSATHNDLGELAQDGRFRHDLYYRINVIELRVPPLRERTGDLP
LLTGAILTRLAGHQQRSAPHLTAAALEALARYPFPGNVRELENILERAMAMADGEAIDAGDLRLPQAERRAPAPLAALPP
AQDHDPFRPNPGPFGSPPPANGAPAGNGDAEGPLPSYIEQMERAAIHKALEDNRWNKTKAAAQLGITFRALRYKLKKLGI
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-95 47
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-95 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_05260 YP_004929744.1 Fis family transcriptional regulator BAC0089 Protein 2e-67 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_05260 YP_004929744.1 Fis family transcriptional regulator VFG1214 Protein 4e-120 60
DSC_05260 YP_004929744.1 Fis family transcriptional regulator VFG0116 Protein 4e-62 43
DSC_05260 YP_004929744.1 Fis family transcriptional regulator VFG1249 Protein 9e-63 42