Gene Information

Name : DSC_04295 (DSC_04295)
Accession : YP_004929553.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Virulence
Product : phage transcriptional regulator, AlpA
Function : -
COG functional category : K : Transcription
COG ID : COG3311
EC number : -
Position : 719261 - 719479 bp
Length : 219 bp
Strand : -
Note : COG3311 Predicted transcriptional regulator

DNA sequence :
ATGTCGGAGGAAACACCCCTCCCGCTCCCCGCGGTCGAGCATCGCATCCTGCGTCGCGACGAAGTTGAAGCCAAGACTGG
ATTCAAGCGCGCGCACCTCTACAACCTGATGAGAGCCGGCAAGTTCCCGAAAGCCATTCGCCTCGGGATTCGTGCCGTCG
GTTGGGATTCACTCGAAGTAGAGCAGTGGATCGCCGAGCGCCGAAAACAGCGCGTCTGA

Protein sequence :
MSEETPLPLPAVEHRILRRDEVEAKTGFKRAHLYNLMRAGKFPKAIRLGIRAVGWDSLEVEQWIAERRKQRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF SG104 AAN62325.1 phage-related protein Not tested PAGI-3(SG) Protein 5e-21 67
ORF C109 AAN62202.1 phage-related protein Not tested PAGI-2(C) Protein 3e-18 66
VC1785 NP_231420.1 transcriptional regulator Not tested VPI-2 Protein 8e-07 41
VC0395_A1382 YP_001217325.1 transcriptional regulator Not tested VPI-2 Protein 8e-07 41
VPI2_0033 AAX20900.1 transcriptional regulator Not tested VPI-2 Protein 6e-07 41
VC0497 NP_230151.1 transcriptional regulator Not tested VSP-2 Protein 4e-06 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_04295 YP_004929553.1 phage transcriptional regulator, AlpA VFG1118 Protein 2e-07 41