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Name : DSC_04250 (DSC_04250) Accession : YP_004929544.1 Strain : Pseudoxanthomonas spadix BD-a59 Genome accession: NC_016147 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 710373 - 712388 bp Length : 2016 bp Strand : - Note : COG0550 Topoisomerase IA DNA sequence : ATGCGCGTGGTTCTGTGCGAGAAGCCTTCCCAGGGCAAGGACATCGCCCGCGTCCTGGGCGCCACGCAGCGAGGCAACGG CTGCTACACCGGCTCTGGCCTCGGCGTGACCTGGGGCATCGGCCATCTGATCGAGACCGCTCCCCCGGAAGCCTACGGTG AGCAGTACAAGCGATGGGCGCTGGAACCGCTGCCCATCATTCCCCAGCACTGGCAGGTCGTGGTCAAGGCCAAGACCGCC ACGCAGTTCAAGGTCGTCAAGCAGCTGCTGGCACAGGCCACCGATCTGGTGATCGCGACCGACGCCGATCGCGAGGGCGA GATGATCGCCCGCGAGCTGATCGACTACTGCGGCTACCGCGGCCCGATCCAACGGCTGTGGTTGTCCGCGCTCAACGATG CGTCGATCCGCAAGGCACTCGGCGCGCTCAAGCCGTCCGGCGAGACGTTGCCGCTGTACTACTCGGCCCTGGCGCGCTCG CGCGCCGACTGGCTGATCGGCATGAACCTGAGCCGGCTATTCACTGTGCTCGGGCGCCAGGCCGGCTATTCCGGCGTGCT GTCGGTCGGTCGCGTGCAGACGCCGACGCTGAAGCTCGTCGTGGACCGCGACCGCGAGATCGCGCGCTTCGTCTCCGTGC CGTTCTGGACGATCGAGGTGTTGCTGGCTCATGCCGGCCAGTCCTTCGTGGCCAACTGGACGCCTCCGGCGGGTTGCACC GACGACGCCGGGCGCTGCCTGCAGCAGCCCGTCGCGCAGCAGGCGGACGAACGCATGCGCGCGGCCGTCAGCGCGCAAGT GGTGTCCGTCGAGACCGAGCGCATGCGCGAGGGACCGCCGCTGCCGTTCGACCTGGGAACGCTTCAGGAAGTGTGTTCCA AGCAGCTTGGGCTGGACGTGCAGGAGACGCTGGACATCGCGCAGTCCCTCTACGAGACGCACAAGGCCACGACCTATCCT CGCTCGGATTCGGGCTATCTGCCCGAGAACATGCTGGCCGAAGTGCCGACCGTACTCGACAGCCTGGTCAAGACCGATCC AAGCCTTCGCCCGCTGGTCGCCAAGCTCGATCCCCATCAGCGCTCGCGCGCATGGAACGACGCCAAGGTCACGGCGCACC ACGGCATCATTCCAACGCTCGAACCGGCGAACCTATCGGCCCTGAACGACAAGGAGCTGGCCGTCTACCGACTGATCCGC GCCCACTACCTCGCACAGTTCCTGCCGCATCACGAGTTCGACCGCACCGTGGCGCAGTTCGCGTGCGCCGGCCAGTCGCT CACCGTGGTCGGCAAGCAGATTGTCGTGACCGGCTGGCGCCAGGTGCTGGCGGCGCCGGCACCGGACGAACCGGACGAGG ACGCACAGCGCAGCCAGGTGCTGCCCGCGCTGCACGCCGGCTTGTCATGCCCCATCGGCGCCGTCGATCTGAAGGCATTG AAGACCCTGCCGCCCAAGCCGTACACGCAGGGCGAGCTGGTCAAGGCCATGAAGGGCGTCGCCAGGCTGGTCACCGACCC GCGGCTCAAGCAGAAGCTCAAGGACACCACCGGCATCGGCACCGAGGCCACGCGCGCCAACATCATCAACGGACTGCTGG GCCGCGGCTATCTGCTGAAGAAGGGCCGCGCGATCCGGGCTTCCGATGCGGCCTTCACCCTGATCGACGCGGTGCCGCCA GCGATCGCAGATCCGGGCACGACCGCCGTGTGGGAACAGGCGCTGGACATGATCGAAGCGCGGCAGATGACGCTGGACGC CTTCATCGCCAAGCAATCCGCCTGGGTCGCCCAGCTCGTGCAGCAATACCGCACCGCAACGCTCTCCATCCAACTGCCAC CCGCGCCAGCCTGTCCGCAATGCGGCTCGCCGATGCGCCAGCGCACGGGCAAGAGCGGTGCCTTCTGGTCCTGTAGCCGC TATCCGGACTGCAAGGGCACGATGGCCATCGAATCCGCGACCGGCGGCAAGCGCAGCGCGCCGCGCAAGCGGCGCACCGC ACCCAAGGCGTCCTGA Protein sequence : MRVVLCEKPSQGKDIARVLGATQRGNGCYTGSGLGVTWGIGHLIETAPPEAYGEQYKRWALEPLPIIPQHWQVVVKAKTA TQFKVVKQLLAQATDLVIATDADREGEMIARELIDYCGYRGPIQRLWLSALNDASIRKALGALKPSGETLPLYYSALARS RADWLIGMNLSRLFTVLGRQAGYSGVLSVGRVQTPTLKLVVDRDREIARFVSVPFWTIEVLLAHAGQSFVANWTPPAGCT DDAGRCLQQPVAQQADERMRAAVSAQVVSVETERMREGPPLPFDLGTLQEVCSKQLGLDVQETLDIAQSLYETHKATTYP RSDSGYLPENMLAEVPTVLDSLVKTDPSLRPLVAKLDPHQRSRAWNDAKVTAHHGIIPTLEPANLSALNDKELAVYRLIR AHYLAQFLPHHEFDRTVAQFACAGQSLTVVGKQIVVTGWRQVLAAPAPDEPDEDAQRSQVLPALHAGLSCPIGAVDLKAL KTLPPKPYTQGELVKAMKGVARLVTDPRLKQKLKDTTGIGTEATRANIINGLLGRGYLLKKGRAIRASDAAFTLIDAVPP AIADPGTTAVWEQALDMIEARQMTLDAFIAKQSAWVAQLVQQYRTATLSIQLPPAPACPQCGSPMRQRTGKSGAFWSCSR YPDCKGTMAIESATGGKRSAPRKRRTAPKAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 77 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 77 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 65 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 9e-170 | 52 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 1e-169 | 52 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 1e-169 | 52 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 2e-161 | 51 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 7e-167 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 3e-118 | 41 |
