Gene Information

Name : DSC_04205 (DSC_04205)
Accession : YP_004929535.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 702850 - 703674 bp
Length : 825 bp
Strand : -
Note : -

DNA sequence :
ATGCAACTCGCATCTCGCTTCGGATCGGGATCTCCCGTGCTGCGTTCGGATCGCCCGCTGTCGGACGATCAGATCCGCAC
CGTCGCCCCGTCCATCTTCGCCGAGGCCGCGCACGAGAGCCGGTCGGAGCGCTATAGCTACATCCCCACGGCCACCGTGC
TGACGAAGCTGCGCGACGAAGGCTTCGAGCCGTTCTTCGTGTGCCAGACCCGCGTGCGGCAGGAGGATCGCCGCGACTAC
ACCAAGCACATGCTGCGGCTGCGGCACGCCAGTCAGATCAACGGCAGCGAGGCCAACGAAATCATCTTGCTCAACTCGCA
CGATGGCACCAGCAGCTACCAGATGCTGGCCGGCGTCCTCGTCTTTGCCTGCCACAACGGTCTGGTGTTCGGCGACATGA
CTGCCGACGTGCGCGTCCCCCACAAGGGAGACGTCGCGTCCCACGTCATCGAAGGCGCCTACGAAGTCCTAAGCGGCTTC
GAGCGCGTCGATCAGTCCCGCGAGGCGATGCGCGCCATCTCGCTGGACAGCGGCGAGGCGGAAGTGTTCGCGCGCTCGGC
GCTGGAACTGAAGTACGACGGTTCCAAGCCGGCGCCGATCACGGAGAGCCAGCTGCTGCGTCCACGGCGGTACGAAGACC
GTGGTTCCGACCTGTGGTCCACGTTCAACCGCGTGCAGGAGAACCTGGTCAAGGGGGGCCTGGACGGTCGCACTGCCAAC
GGGCGCCGGCAACACACACGGCCGGTGCAAGGCATCGACCAGAACGTGCGCCTGAACCGCGCCCTTTGGCTGCTGGCCGA
AGGCATGCAGAAACTGAAAGCGTAA

Protein sequence :
MQLASRFGSGSPVLRSDRPLSDDQIRTVAPSIFAEAAHESRSERYSYIPTATVLTKLRDEGFEPFFVCQTRVRQEDRRDY
TKHMLRLRHASQINGSEANEIILLNSHDGTSSYQMLAGVLVFACHNGLVFGDMTADVRVPHKGDVASHVIEGAYEVLSGF
ERVDQSREAMRAISLDSGEAEVFARSALELKYDGSKPAPITESQLLRPRRYEDRGSDLWSTFNRVQENLVKGGLDGRTAN
GRRQHTRPVQGIDQNVRLNRALWLLAEGMQKLKA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C80 AAN62174.1 conserved hypothetical protein; associated with oriT region on plasmids Not tested PAGI-2(C) Protein 1e-105 79
ORF SG86 AAN62307.1 conserved hypothetical protein Not tested PAGI-3(SG) Protein 8e-105 78
ECO103_3587 YP_003223444.1 hypothetical protein Not tested LEE Protein 2e-72 55
aec71 AAW51754.1 Aec71 Not tested AGI-3 Protein 2e-72 54
S3199 NP_838482.1 hypothetical protein Not tested SHI-1 Protein 1e-72 54
yafZ ADD91704.1 YafZ Not tested PAI-I AL862 Protein 2e-72 54
SF2994 NP_708768.1 hypothetical protein Not tested SHI-1 Protein 1e-72 54
z1215 CAD33785.1 Z1215 protein Not tested PAI I 536 Protein 6e-73 54
Z1215 NP_286750.1 hypothetical protein Not tested TAI Protein 8e-73 54
yafZ CAE85199.1 YafZ protein Not tested PAI V 536 Protein 2e-74 54
Z1655 NP_287158.1 hypothetical protein Not tested TAI Protein 8e-73 54
unnamed CAD42096.1 hypothetical protein Not tested PAI II 536 Protein 1e-71 54
unnamed CAD66201.1 hypothetical protein Not tested PAI III 536 Protein 1e-71 54
c5156 NP_757004.1 hypothetical protein Not tested PAI II CFT073 Protein 9e-72 54
ORF_47 AAZ04456.1 conserved hypothetical protein Not tested PAI I APEC-O1 Protein 6e-72 54
yafZ YP_854321.1 hypothetical protein Not tested PAI I APEC-O1 Protein 8e-72 54
unnamed CAI43843.1 hypothetical protein Not tested LEE Protein 2e-72 54

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_04205 YP_004929535.1 hypothetical protein VFG0658 Protein 6e-73 54
DSC_04205 YP_004929535.1 hypothetical protein VFG1676 Protein 7e-72 54
DSC_04205 YP_004929535.1 hypothetical protein VFG1526 Protein 3e-73 54
DSC_04205 YP_004929535.1 hypothetical protein VFG1615 Protein 8e-72 54