Gene Information

Name : DSC_03825 (DSC_03825)
Accession : YP_004929459.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Resistance
Product : heavy metal translocating P-type ATPase
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : -
Position : 626099 - 628198 bp
Length : 2100 bp
Strand : -
Note : COG2217 Cation transport ATPase

DNA sequence :
ATGAATCCCCATGATCCGCACGCGCAGCATCATCACGATCACGGCAATCACGCCCATTCTCCGTCGCCGCCGGCCAAAGC
CGTGGTGAGCGCTGCGGGCTCCACTCACGCCGGACATTCCGGGCATGCCGGCCACGACCACGGTGCCATGGTCGCCGACT
TCCGCAGGCGCTTCTGGGTCACGCTGCTGCTGACTCCGTTCGTCCTCGCGCTGTCGCCCATGATCCAGCACGCCCTGGGC
CTGGGCGAGGTGCTGGCCTTCCGCGGCGATCGTTACGTCCTGTTCGCCTTGTCGACCGTGGCCTATCTCTATGGCGGCTG
GCCGTTCCTGGTCGGCGTCGTCTCCGAACTGCGCAAGCGCCAGCCCGGCATGATGACGCTGATCGCGTTGGCCATCTCGG
CGGCCTACGTCTTCTCGGTGGCCGTGACCTTCGGCTTTCCGGGCCAGGAGTTCTACTGGGAGCTGGTGACGCTGATCGCG
ATCATGCTGCTGGGGCACTGGGTCGAAATGCGCTCGGTCATGGGCGCCTCGCGCGCCCTGGAGGAACTGGTCAAGCTGCT
GCCCGACAGCGCCACCCGCATCGACGGCGATGGCAGCCTGCATGACGTGCCGATCAGTGCGTTGCAGCCGGGCGACCGCG
TGATAGTCCGCCCGGGCGCCAAGGTACCGGTGGACGGCGAGATAACCGAGGGTTCCTCGGGCTTCAATGAAGCCATGCTC
ACCGGCGAATCCCGGCCGGTCACCAAGGGAGTCGGCGCCACCGCGATCGGCGGCGCCATCAACGGGGCGAACGCCGTCAC
CATCCGCGTCACGGCCACGGGCGATGCCACGTATCTGTCGCAGGTGATCGAGCTGGTCAAGAAGGCGCAGCAGACCCGTT
CGCGTACGCAGGACATCGCCAACCGCGCCGCGGCCTGGCTGACCTACATCGCCTTGGCTGTGGGCGTCGGTACGCTGCTG
GTCTGGTGGCTGATGCTCGACGCGCCGCTCAATTTCGCCATCGAGCGCATGGTCACCGTCATGGTCGTCGCCTGCCCGCA
CGCGCTGGGGCTGGCGGTGCCGTTGGTGGTCGCGGTCAGCACGTCGCTGAGCGCAAGCAATGGCTTGCTGATCCGTGACC
GGGCCGCGTTCGAGCGCGCGCGCCGGCTGGATGCGGTCGTGTTCGACAAGACGGGCACCCTGACCGAGGGGCGCTTCGGG
GTCAGCGACATCGTGTTGCTGCAGGAGGGTGACGAGAGCCAGGAGCTGGCCTTCGCCGCGGCGGCGGAAAGCCAGTCGGA
ACACCCGATCGCCCATGGCATCGTGGCCGAGGCCAAGCGCCGCGGCATCGCCCTCCCCAAGGCGAGTGAAGTGAGCAACA
TCACCGGCGAAGGCATCGTCGCCGTCGTCGGCGATGTGCGCGTGCGCATCGTCAGCCCGGGCCACCTGGCCCGCCAGGGC
AACGCCATCACCCACGAGCGGCTTGGACAGCTCGAATCCGCGGGAAAGACCGTCGTCGTGCTCGAACGCGACGGCCAGGC
GCGCGCGCTCTTCGCGCTCGCCGATATCGTACGGCCGGAGTCCAAGGAGGCCATCGCGGAATTGACCCGGTTGGGGATTC
GCTCGGTGATGCTGACGGGCGATGCACGGGGCGTGGCCGAATCGGTGTCCAAGGAACTCGGGATCTCCGAGTACTTCGCC
GAGGTGCTGCCCGACCAGAAATCCGAGAAGATCCGGGAGCTGCAGGCACGCGGCCTGTCGGTGGCCATGGTGGGCGACGG
CGTGAACGACGCCCCGGCGCTGGTGCAGGCCGACCTGGGCGTGGCCATCGGCGCAGGCACGGACGTGGCCGTGGAGTCCG
CCGACGTCGTACTCGTCCGCAGCGATCCGCGCGACGTGGGAGCGATCCTGGGCCTGTCGCGCGCGACCTATCGCAAGATG
GTCCAGAACCTGATCTGGGCGACCGGCTACAACACCGTCGCGGTGCCGATGGCCGCGGGCATCACCTTCGGGACGGGCTT
CCTGATGACGCCCGCCATCGCTGCCGTCTTCATGTCGGCCAGCACGGTGATCGTCGCCATCAATGCCCAACTCCTTCGTT
TCTACAGGCGGCACGCATGA

Protein sequence :
MNPHDPHAQHHHDHGNHAHSPSPPAKAVVSAAGSTHAGHSGHAGHDHGAMVADFRRRFWVTLLLTPFVLALSPMIQHALG
LGEVLAFRGDRYVLFALSTVAYLYGGWPFLVGVVSELRKRQPGMMTLIALAISAAYVFSVAVTFGFPGQEFYWELVTLIA
IMLLGHWVEMRSVMGASRALEELVKLLPDSATRIDGDGSLHDVPISALQPGDRVIVRPGAKVPVDGEITEGSSGFNEAML
TGESRPVTKGVGATAIGGAINGANAVTIRVTATGDATYLSQVIELVKKAQQTRSRTQDIANRAAAWLTYIALAVGVGTLL
VWWLMLDAPLNFAIERMVTVMVVACPHALGLAVPLVVAVSTSLSASNGLLIRDRAAFERARRLDAVVFDKTGTLTEGRFG
VSDIVLLQEGDESQELAFAAAAESQSEHPIAHGIVAEAKRRGIALPKASEVSNITGEGIVAVVGDVRVRIVSPGHLARQG
NAITHERLGQLESAGKTVVVLERDGQARALFALADIVRPESKEAIAELTRLGIRSVMLTGDARGVAESVSKELGISEYFA
EVLPDQKSEKIRELQARGLSVAMVGDGVNDAPALVQADLGVAIGAGTDVAVESADVVLVRSDPRDVGAILGLSRATYRKM
VQNLIWATGYNTVAVPMAAGITFGTGFLMTPAIAAVFMSASTVIVAINAQLLRFYRRHA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 2e-83 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_03825 YP_004929459.1 heavy metal translocating P-type ATPase BAC0629 Protein 4e-158 60
DSC_03825 YP_004929459.1 heavy metal translocating P-type ATPase BAC0079 Protein 1e-119 45
DSC_03825 YP_004929459.1 heavy metal translocating P-type ATPase BAC0383 Protein 9e-92 41
DSC_03825 YP_004929459.1 heavy metal translocating P-type ATPase BAC0622 Protein 2e-77 41