Gene Information

Name : DSC_01180 (DSC_01180)
Accession : YP_004928930.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 48063 - 48746 bp
Length : 684 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAACTGCTGATCATCGAAGACGAAGCCAAGACGGCCGGCTACCTGACCCGCGGCCTGGGCGAGGAAGGCTACAGCGT
GGACCATGCGGCCAACGGCGTGGACGGCCTGCACCTGGCCCTGACCGGGGACTACGATGCGGTCGTGCTGGACATCATGC
TGCCGGGCATGGACGGCCTGCAGGTGCTGCAGGCGCTGCGCGCCCAGCGCGACACCCCGGTGATCATGCTCACCGCGCGC
GACCAGGTCGACGATCGCCTGCGCGGCCTGGGTGCAGGCGCCGATGATTACCTGGTCAAGCCGTTTTCCTTCCTGGAACT
GCTGGCGCGCGTGCAGGCCATCACCCGCCGCGGCCGCGCCCACGAAGCCACCCAGATCCAGGTCGGCGACCTGCACATCG
ACCTGCTGGCCCGTCGCGCCACCCGCCGCGGCCGGCGCCTGAACCTGTCGGCCAAGGAGTTTGCACTGCTGGCCGCGCTG
GCCCGCCGCCGCTCGCAGATCCTGTCCAAGACGGTGATCACCGAGACGGTGTGGGACATCAACTTCGACACCAACACCAA
CGTGGTGGAAGTGGCGATCAAGCGCCTGCGCGCCAAGCTGGAGTACCCGGGCGAGACCAAGCTGCTGCATACCGTGCGCG
GCATGGGCTACGTGCTCGAGGTGCGCGAGGACCAGGCCGAGTGA

Protein sequence : 
MKLLIIEDEAKTAGYLTRGLGEEGYSVDHAANGVDGLHLALTGDYDAVVLDIMLPGMDGLQVLQALRAQRDTPVIMLTAR
DQVDDRLRGLGAGADDYLVKPFSFLELLARVQAITRRGRAHEATQIQVGDLHIDLLARRATRRGRRLNLSAKEFALLAAL
ARRRSQILSKTVITETVWDINFDTNTNVVEVAIKRLRAKLEYPGETKLLHTVRGMGYVLEVREDQAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-48 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-47 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator BAC0083 Protein 2e-49 56
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator BAC0197 Protein 2e-53 56
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator BAC0125 Protein 1e-51 55
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator BAC0638 Protein 4e-47 53
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator BAC0111 Protein 1e-50 52
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator BAC0308 Protein 4e-47 49
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator BAC0347 Protein 1e-44 48
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator NC_010079.5776364.p0 Protein 2e-31 42
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator NC_002952.2859858.p0 Protein 2e-31 42
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator NC_007622.3794948.p0 Protein 2e-31 42
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator NC_003923.1003417.p0 Protein 2e-31 42
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator NC_013450.8614146.p0 Protein 2e-31 42
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator NC_002951.3238224.p0 Protein 2e-31 42
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator NC_007793.3914065.p0 Protein 2e-31 42
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator NC_002758.1121390.p0 Protein 2e-31 42
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator AE000516.2.gene3505. Protein 9e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator VFG0596 Protein 4e-49 54
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator VFG1389 Protein 2e-32 49
DSC_01180 YP_004928930.1 DNA-binding heavy metal response regulator VFG1390 Protein 4e-35 44