Gene Information

Name : xerD (DSC_02665)
Accession : YP_004929227.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Unknown
Product : site-specific tyrosine recombinase XerD
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 362940 - 364007 bp
Length : 1068 bp
Strand : +
Note : COG4974 Site-specific recombinase XerD

DNA sequence : 
ATGCCATCGCCCGCCGCACGCCGCCAGGTCATCAATGCACTGCCCGGATGCGGGCCGGCCGATGCCCGCAGCATCGACGC
CTTCCTGGACGCGGCCTGGGCCGAGGGCGGCTTGGCGCGGGCCACACTGGACAGCTATCGGCGCGACCTGCAGGGCCTGG
CGCGCTGGGCGGGTTGGCGCGCTGGCCAGCCAGCGGCGCCCACGCCGGCGAGCGCCCCTCCAGGGATGGACGGGCTGGAC
CTCCAGGACGCCCGTCATGGCGCACCGGGCAGGGCATCCGGGAACTGGCTGGCAACCGCGGACCGTGGGTTGCTGTTCGA
CTACCTGGCCTGGCGCGCGCGCGCAGGCTACTCGCCGCGCAGCAACGCCCGGCTGCTGTCCTGCCTGCGCGCGTTCTACC
GCCAGCTGGTGCGGCGCGGTGCGCGCGCCGACGATCCGACCGCACTGCTGGAGCCGCCGCAATTGCCGCGCTCGCTGCCC
AAGGCGTTGTCGGAAGGCCAGATCGAGGGCCTGCTGGACGCGCCGGACCTGGACACCCCGCTGGGCCTGCGCGACCGCGC
GATGCTGGAGCTGATGTACGCCTGCGGGCTGCGCGTGAGCGAGCTGGTGGACCTGCCGGCCAATGCGGTGAACCTGCGCC
AGGGCGTGGTGCGCGTCACCGGCAAGGGCAGCAAGGAGCGGCTGGTGCCGCTGGGCGAGGAGTCACAGCACTGGCTGCAG
CGCTATCTGGATCAGGCGCGACCGCAGCTGTCGGCCGGCAAGGCAGTGCCGGCCATGGCCGACGGCCAGGTGCCGTTGTT
CATCGATGGCAAGCGCCGGGCGCTGAGCCGGCAGGCGTTCTGGGGGTTGGTCAAGCGCTATGCGGCGGCGGCCGGGATCG
ATCCGGCCAAGGTCAGCCCGCATGGCCTGCGCCACAGCTTTGCCACCCACCTGCTCAACCGCGGCGCCGACCTGCGCTCG
CTGCAGCTGATGCTGGGCCACAGCTCGCTGTCCACCACCCAGATCTACACCCTGGTCGCCCGCCAGCACCTCCAGCAGCT
CCACACCAAACACCACCCGAGGGGGTGA

Protein sequence : 
MPSPAARRQVINALPGCGPADARSIDAFLDAAWAEGGLARATLDSYRRDLQGLARWAGWRAGQPAAPTPASAPPGMDGLD
LQDARHGAPGRASGNWLATADRGLLFDYLAWRARAGYSPRSNARLLSCLRAFYRQLVRRGARADDPTALLEPPQLPRSLP
KALSEGQIEGLLDAPDLDTPLGLRDRAMLELMYACGLRVSELVDLPANAVNLRQGVVRVTGKGSKERLVPLGEESQHWLQ
RYLDQARPQLSAGKAVPAMADGQVPLFIDGKRRALSRQAFWGLVKRYAAAAGIDPAKVSPHGLRHSFATHLLNRGADLRS
LQLMLGHSSLSTTQIYTLVARQHLQQLHTKHHPRG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 2e-58 52
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 2e-58 52