Gene Information

Name : DSC_15610 (DSC_15610)
Accession : YP_004931807.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Resistance
Product : peptidase M15D vanX D-ala-D-ala dipeptidase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG2173
EC number : -
Position : 3194844 - 3195563 bp
Length : 720 bp
Strand : -
Note : COG2173 D-alanyl-D-alanine dipeptidase

DNA sequence : 
GTGAGCGCACGCGCGCGCCGCATCGCCTGGGTGCTGTTAGCGCTGCTGGCCCTGGCGCCGGCGTTGGCACAGGCGCCGGT
GACGATCTCGCCGGCGACCGACGCGGCGCAGGTCGACCTGGTGGACGTGGCCACGCTGATGCCACAGGTGCAGCGCGACA
TCCGCTACGCCGGATCGGACAACTTCATCGGTGCGCCGGTGGACGGCTACCAGGCCCCCAAGTGCCTGCTGCTGCGGCCG
GTGGCGCGCGCGCTGGCGCAGGTGCAGGCCGACCTGCGCGCACAGGGCCTGGGCCTGAAGCTGTTCGACTGCTATCGCCC
GGTGCGCGCGGTGCAGGCCTTCGTGCGCTGGGCCGACGACCTGTCCGACCAGAAGATGAAAGCCGAGTTCTACCCGGCCC
TGGACAAGGCGCGGATCATCCCCGATGGCTACGTGGCACCCGTCTCCGGCCACAGCCGCGGCGCCACCGTCGATCTGACC
CTGGTGCGCTGCACGGACGGTGGCTGCGATGCGCTGGACATGGGCACGCCGTTCGATTTCTTCGACCCGCGCGCGCATAC
CGATGCAGCGGACATCACCGCCGCGCAGCGCGAGAACCGCAGCTTGCTGCTGCAAGCGATGGCGCGCCGCGGTTTTGTCA
ACTATCCCAGGGAATGGTGGCATTACACCTTCCAGCCCGAACCCACGCCGCGCCTGGCCTACGACGTGCCGGTGCGTTGA

Protein sequence : 
MSARARRIAWVLLALLALAPALAQAPVTISPATDAAQVDLVDVATLMPQVQRDIRYAGSDNFIGAPVDGYQAPKCLLLRP
VARALAQVQADLRAQGLGLKLFDCYRPVRAVQAFVRWADDLSDQKMKAEFYPALDKARIIPDGYVAPVSGHSRGATVDLT
LVRCTDGGCDALDMGTPFDFFDPRAHTDAADITAAQRENRSLLLQAMARRGFVNYPREWWHYTFQPEPTPRLAYDVPVR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
vanXB YP_008394260.1 D-alanyl-D-alanine dipeptidase Not tested Not named Protein 4e-33 42
vanX NP_815950.1 D-alanyl-D-alanine dipeptidase Not tested Not named Protein 2e-33 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_15610 YP_004931807.1 peptidase M15D vanX D-ala-D-ala dipeptidase AE016830.1.gene2249. Protein 1e-33 42
DSC_15610 YP_004931807.1 peptidase M15D vanX D-ala-D-ala dipeptidase AF310956.2.orf6.gene Protein 2e-33 42
DSC_15610 YP_004931807.1 peptidase M15D vanX D-ala-D-ala dipeptidase FJ349556.1.orf5.gene Protein 8e-35 41
DSC_15610 YP_004931807.1 peptidase M15D vanX D-ala-D-ala dipeptidase U35369.1.gene7.p01 Protein 3e-33 41