Gene Information

Name : DSC_15000 (DSC_15000)
Accession : YP_004931685.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4181
EC number : -
Position : 3067139 - 3067864 bp
Length : 726 bp
Strand : -
Note : COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component

DNA sequence : 
ATGGCCGACGCTCCCCTGCTGCACGCTGACACGCCCCTCGCTTCCTCCCAGGCCGCACCGGTGCTGCAGGTCGCCTCGCT
CGGCAAGCAGGTCACCCTGCCGGGCAGCACCCTGACCATCCTGGACGGGGTGTCCTTCCAGATCGGGCGCGGCGATACGG
TGGCCATCGTCGGCGCCTCCGGCTCGGGCAAGAGCACGCTGCTGTCGCTGCTGGCCGGGCTGGACACGCCCAGCAGCGGC
ACGGTGACCCTGGATGGCCAGGTACTCTCGGCGCTGGACGAAGACGGCCGGGCGCGGGTGCGTGGCGAGAAGGTCGGCTT
CGTGTTCCAGAACTTCCAGCTGCTGCCTTCGCTGACCGCGCTGGAAAACGTGATGCTGCCGCTGGAGCTGCGCGGCGACG
CCGATCCGCGCGCGCCGGCCGAGAAGATCCTGGCCGATGTCGGCCTGTCCGCGCGCCTGGCCCATTACCCGCGCCAGCTC
TCCGGCGGCGAGCAACAGCGCGTGGCCCTGGCCCGTGCGTTCGTGACCCGGCCGGCGCTGCTGTTTGCCGACGAGCCGAC
CGGCAACCTGGACCAGCGCACCGGCCAGGCCATCGAGGAGCTGTTGTTCGCCCTCAACGCCCAGGCCGGCACCACCCTGG
TGCTGGTCACTCACGACGAGGCCCTGGCCGGGCGCTGCACCCGCGTGCTGCGCCTGGACAGCGGCAAGTTGGTGGCCGGC
GCATGA

Protein sequence : 
MADAPLLHADTPLASSQAAPVLQVASLGKQVTLPGSTLTILDGVSFQIGRGDTVAIVGASGSGKSTLLSLLAGLDTPSSG
TVTLDGQVLSALDEDGRARVRGEKVGFVFQNFQLLPSLTALENVMLPLELRGDADPRAPAEKILADVGLSARLAHYPRQL
SGGEQQRVALARAFVTRPALLFADEPTGNLDQRTGQAIEELLFALNAQAGTTLVLVTHDEALAGRCTRVLRLDSGKLVAG
A

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-26 47
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-26 46
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 1e-26 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-26 46
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-23 44
unnamed ABA47263.1 ABC transporter Not tested S-PAI Protein 3e-14 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_15000 YP_004931685.1 ABC transporter NC_008702.1.4606598. Protein 2e-35 50
DSC_15000 YP_004931685.1 ABC transporter NC_012469.1.7686878. Protein 7e-30 47
DSC_15000 YP_004931685.1 ABC transporter NC_012469.1.7685735. Protein 5e-27 45
DSC_15000 YP_004931685.1 ABC transporter NC_012469.1.7686946. Protein 4e-18 43