Gene Information

Name : DSC_14045 (DSC_14045)
Accession : YP_004931494.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Resistance
Product : putative ATP-binding component of ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2859155 - 2859841 bp
Length : 687 bp
Strand : +
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGTCCACCCTCGTCACCCTGCGCAACATCACCAAGACCTACCAGCGCGGCCCGGAGCAGGTCAAAGTGCTGCACGGCAT
CGACCTGGACATCGCCCGCGGCGATTTCGTCGCGCTGATGGGCCCGTCCGGCTCGGGCAAGACCACCCTGCTCAACTTGA
TCGGCGGCCTGGATTGGCCCAGCTCCGGGCAGATCGAGATCGAAGGCGAGCGCATCGACCGCATGAGCGGCGCCCAGCTG
GCGACCTGGCGCAGCCACCACGTCGGCTTCGTGTTCCAGTTCTACAACCTGATGCCGATGCTCACCGCGCAGAAGAACGT
GGAGCTGCCGCTGCTGCTGACCCACCTCAACGCGGCCCAGCGCAAGCGCAACGCGCAGATCGCCCTGACCCTGGTGGGCC
TGGCCGAGCGTCGCGACCATCGCCCCAGCGAACTGTCCGGCGGCCAGCAGCAGCGCGTGGCGATCGCCCGGGCGATCGTG
TCCGACCCGACTTTCCTGATCTGCGACGAACCGACCGGCGACCTGGACCGGCAGTCGGCCGAGGACGTCCTGGGCCTGCT
GCAGCAGCTCAACCGCGAGCACGGCAAGACCATCATCATGGTCACCCACGATCCGAAGGCGGCCGAATACGCCACCCACA
CCGTGCACCTGGACAAGGGCGAGCTGGCCACCGAAGCAGCTCACTGA

Protein sequence : 
MSTLVTLRNITKTYQRGPEQVKVLHGIDLDIARGDFVALMGPSGSGKTTLLNLIGGLDWPSSGQIEIEGERIDRMSGAQL
ATWRSHHVGFVFQFYNLMPMLTAQKNVELPLLLTHLNAAQRKRNAQIALTLVGLAERRDHRPSELSGGQQQRVAIARAIV
SDPTFLICDEPTGDLDRQSAEDVLGLLQQLNREHGKTIIMVTHDPKAAEYATHTVHLDKGELATEAAH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-33 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-34 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 8e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_14045 YP_004931494.1 putative ATP-binding component of ABC transporter NC_012469.1.7686878. Protein 1e-51 47
DSC_14045 YP_004931494.1 putative ATP-binding component of ABC transporter NC_008702.1.4606598. Protein 9e-42 47
DSC_14045 YP_004931494.1 putative ATP-binding component of ABC transporter CP001581.1.gene798.p Protein 8e-45 43
DSC_14045 YP_004931494.1 putative ATP-binding component of ABC transporter NC_012469.1.7685735. Protein 1e-39 42