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Name : DSC_10970 (DSC_10970) Accession : YP_004930879.1 Strain : Pseudoxanthomonas spadix BD-a59 Genome accession: NC_016147 Putative virulence/resistance : Virulence Product : type II protein secretion system ATPase Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 2178863 - 2180362 bp Length : 1500 bp Strand : + Note : COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB DNA sequence : ATGAGCGCACGCCCGGCCTTCGACTATGGCTTTGCGCGCGAGCACGGCGTCGTGCCGATGGCCGCGGCAAGCGATGACAC GCTCGGCCAGCACGTCCGCGTCGGCCTGCGCGAGGGCGCCGATCCGCGCGGCCTGCTGGAGGCGCGCCGCTGCCTGGGTG CACCGCTGCAGGTGGAAGTGCTGCAACGGGTCGCCTTTGATCGGCAACTTGCCGAGACCTATGCCGACGCCGGCCACGGC GCTTCGGTCGAATCGCTGGACCTGCACGCGAACCTCGACCTGCTGGTCGAGGACATCCCGGCCACCGCCGATCTGCTGGA GAGCCAGGACGATGCGCCGATCATCCGCCTGATCAACGGGCTGATCGCCGAAGCCGCGCGCATCGGCGCCTCGGACGTGC ACATCGAGCCGTTCGAGGCCGCCCTGGTGGTGCGCTTCAGGGTGGACGGGGTGATGCGCGAGGCGCTGCGCCTGCCTGCC CGCGTGGCGCCGCTGCTGGTCTCGCGGATCAAGGTGATGGCGCGGCTGGACATCGCCGAGAAGCGCATCCCGCAGGATGG CCGCATCTCGCTGTCGATGGGCGTCAAGGCACTGGACGTGCGCGTGTCCACCCTGCCCGCGCGTGGCGGCGAGCGCGTGG TGCTGCGCATCCTGGACAAGGACCAGGGCACCCTTTCGCTCGAGGACCTGGGCATGCAGCCGACCGTGCTGCGCGCGTTG CGCGCCGCGTTGTGCCAGCCCAATGGCATCATCCTGGTCACCGGCCCGACGGGCTCGGGCAAGACCACCACGCTGTACGC GGGCCTGGCCACGCTCAACGACGGGCTGCGCAACATCCTCACCGTGGAGGATCCGGTCGAATACGCGATGGATGGCGTGG GCCAGACCCAGGTCAATACCAAGGTCGGCATGGGATTCGCCACCGGGCTGCGGGCGATCCTGCGCCAGGACCCGGACGTG GTCATGGTGGGCGAAGTGCGTGACCCGGAGACCGCGCAGATCGCGGTGCAGGCCGCGCTCACCGGCCACCTGGTGCTGTC CACCGTGCATACCAACGACGCCGCCGGTGCCATCACCCGCCTGCGCGACATGGGGGTCGAACCTTTCCTGCTGGCGTCCA CCGTGCGCCTGATCCTGGCCCAACGCCTGGTGCGCCGGCTGTGCGTGCACTGCCGGCGCGAGCGTGCGTCCGATCCGGCA TCGCTGCGGCTGCTGGGCGAGGACTTCACGGGAATCATGTACGAAGCGGTCGGCTGCCCCCGCTGCAACCACACCGGCTA TGCAGGACGGGTCGGCATCTACGAAGCGATCACCGTCGATGACCAGATCCGACGGCTTGTGGGCGCCAATGCCGACGAGG ACGCCATCGCCGCGGCCGCGTTCGCCGGCGGACCCCGGCTGGCCGATGCCGCGCGCAGCTGCGTCGCCCAGGGCTTGACC ACGCTGGAGGAGGCCCTGCGCGTCACCCGGCAGGAGCTGCACGCCGATGCCGACGTTTGA Protein sequence : MSARPAFDYGFAREHGVVPMAAASDDTLGQHVRVGLREGADPRGLLEARRCLGAPLQVEVLQRVAFDRQLAETYADAGHG ASVESLDLHANLDLLVEDIPATADLLESQDDAPIIRLINGLIAEAARIGASDVHIEPFEAALVVRFRVDGVMREALRLPA RVAPLLVSRIKVMARLDIAEKRIPQDGRISLSMGVKALDVRVSTLPARGGERVVLRILDKDQGTLSLEDLGMQPTVLRAL RAALCQPNGIILVTGPTGSGKTTTLYAGLATLNDGLRNILTVEDPVEYAMDGVGQTQVNTKVGMGFATGLRAILRQDPDV VMVGEVRDPETAQIAVQAALTGHLVLSTVHTNDAAGAITRLRDMGVEPFLLASTVRLILAQRLVRRLCVHCRRERASDPA SLRLLGEDFTGIMYEAVGCPRCNHTGYAGRVGIYEAITVDDQIRRLVGANADEDAIAAAAFAGGPRLADAARSCVAQGLT TLEEALRVTRQELHADADV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-99 | 56 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 8e-100 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| DSC_10970 | YP_004930879.1 | type II protein secretion system ATPase | VFG2048 | Protein | 6e-100 | 56 |
| DSC_10970 | YP_004930879.1 | type II protein secretion system ATPase | VFG0182 | Protein | 4e-102 | 55 |
| DSC_10970 | YP_004930879.1 | type II protein secretion system ATPase | VFG1876 | Protein | 2e-96 | 51 |
| DSC_10970 | YP_004930879.1 | type II protein secretion system ATPase | VFG0112 | Protein | 1e-69 | 42 |
