Gene Information

Name : DSC_10450 (DSC_10450)
Accession : YP_004930775.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Virulence
Product : transcriptional regulator, LuxR family protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 2059092 - 2059739 bp
Length : 648 bp
Strand : -
Note : COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

DNA sequence : 
ATGACGATCCGGGTCTTTCTGGTGGACGACCACGCGCTGGTCCGCACCGGGCTGAAGATGATTCTGGCCGATCAGGTCGA
TATCGAGGTGGTCGGGGAAGCCGAAAGCGGCGAGCAGGCACTGCCGCAGATCCGCAGGCTCAAGCCGCACGTGGTGCTGT
GCGACATGCACCTGCCGGGCCTGAGCGGGTTCGATGTGACCGAGCGCATCGTGCGCGGTGGCTCCGGCAGCCGGGTGATC
ATCGTCTCGGTGCTGGAGGACGGGCCATTGCCCAAGCGCGTGCTCGAAGCCGGTGCTTCGGGCTACGTGGGCAAGGGTGG
CGATGCCAACGAACTGCTGCGCGCGGTGCGCGATGTCTCGCGTGGCAAGCGCTACCTGGGCAGCAACGTGGCCCAGAATC
TGGCGCTGTCGTCGATGAGCCAGGACGCCTCGCCGTTTGACGGGCTGACCGCGCGCGAGCTGGAAGTGGTGATGCTGCTG
GTGCAGGGCCTGCGCCAGAACGAAATCGCTGCCCGGCTCAGCCTGAGTCCCAAGACGGTGAGCACGCACAAGACCCGCGT
GTTCCAGAAGGCCCGGGTGCAGGACACGGTGGCGCTGGCCCGGTTGGCCGCGCAATATGGATTGGTCGACACGGCCCGGG
TCGTCTAG

Protein sequence : 
MTIRVFLVDDHALVRTGLKMILADQVDIEVVGEAESGEQALPQIRRLKPHVVLCDMHLPGLSGFDVTERIVRGGSGSRVI
IVSVLEDGPLPKRVLEAGASGYVGKGGDANELLRAVRDVSRGKRYLGSNVAQNLALSSMSQDASPFDGLTARELEVVMLL
VQGLRQNEIAARLSLSPKTVSTHKTRVFQKARVQDTVALARLAAQYGLVDTARVV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00302 YP_008207767.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR25 Protein 2e-42 43
BJAB0868_00306 YP_008211632.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Not tested AbaR26 Protein 2e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_10450 YP_004930775.1 transcriptional regulator, LuxR family protein VFG1889 Protein 4e-42 41