Gene Information

Name : DSC_01675 (DSC_01675)
Accession : YP_004929029.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Unknown
Product : putative integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG4974
EC number : -
Position : 155145 - 156029 bp
Length : 885 bp
Strand : -
Note : COG0582 Integrase

DNA sequence : 
TTGCTGGAGCAGGTTCGCCGGCGTCTGCGGGCCAAGCATTACAGCTTGCGCACCGAGCAGGCCTATGTGGGCTGGATCCG
CCGGTTCATCCTGGCCAACGGCAAACGCCATCCGCGCCAGCTCGGCGCGGCCGAGGTGGAAACCTTCCTGTCCGCATTGG
CCAACGAACACGCGGTGGCCGCCGGCACTCAGAACCAGGCGCTGGCCGCGCTGCTGTTCCTGTACCGGGAAGTGCTTGGA
GACGAGTTGCCCTGGCTGGAGAACCTGACCCGCGCCAAGCGCCCGCAGCGGCTGCCGGTGGTGCTGTCGGTCGAGGAAAC
CCGCACGCTGCTGGCCTGCATGGACGGCCGTGCCTGGCTGGTCGCCAGCCTGTTGTATGGCACCGGCATGCGCCTGATGG
AATGCCTGCGGCTGCGGGTCAAGGATGTGGATTTCACCCGCGGGGAGATCACCGTGCGCGACGGCAAAGGCGGCAAGGAT
CGCCGCACGGTGCTGCCCAGGTCGCTGGCCGAGCCGCTGCAGCGCGAGGTGGAACGGGCACTGCTGCTGCATCGGCGCGA
TGTGGCCCAAGGCCATGGCCATGCGTGGCTGCCGCATGCGCTGGAACGCAAGTATCCAAATGCCAATCGCGAACCGGGCT
GGCAATACGTGTTTCCTTCGCACCATCTGGCTGTCGACCCGCGCAGCGGGGTGCAGCGGCGGCACCACTTCGGCGAGGCG
GTGCTGTCACGGGCACTGAAGACTGCACGCACGCGCGCGCAGCTGCTCAAGCCGGTGACCGCCCATACCTTCCGGCACAG
CTTTGCCACCCATCTGATCGAAGCCGGCTACGACATCCGCACGGTGCAGGAACTGCTCGGCCACAAGGACGTGGCCACCA
CCTAG

Protein sequence : 
MLEQVRRRLRAKHYSLRTEQAYVGWIRRFILANGKRHPRQLGAAEVETFLSALANEHAVAAGTQNQALAALLFLYREVLG
DELPWLENLTRAKRPQRLPVVLSVEETRTLLACMDGRAWLVASLLYGTGMRLMECLRLRVKDVDFTRGEITVRDGKGGKD
RRTVLPRSLAEPLQREVERALLLHRRDVAQGHGHAWLPHALERKYPNANREPGWQYVFPSHHLAVDPRSGVQRRHHFGEA
VLSRALKTARTRAQLLKPVTAHTFRHSFATHLIEAGYDIRTVQELLGHKDVATT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intI1 AGF35060.1 IntI1 integrase Not tested SGI1 Protein 2e-69 55
intI1 ACY75535.1 integrase Not tested Tn6060 Protein 2e-68 55
intI1 ACN81019.1 IntI1 integrase Not tested AbaR5 Protein 3e-69 55
intI1 AGK06930.1 IntI1 integrase Not tested SGI1 Protein 2e-69 55
intI1 AGF34986.1 IntI1 integrase Not tested SGI1 Protein 2e-68 55
intI1 AGK06967.1 IntI1 integrase Not tested SGI1 Protein 2e-69 55
intI1 AGF35026.1 IntI1 integrase Not tested SGI1 Protein 2e-68 55
intI1 AGK07013.1 IntI1 integrase Not tested SGI1 Protein 2e-69 55
intI1 CAB46685.1 DNA integrase Not tested Not named Protein 2e-68 55
intI1 AAK02045.1 integrase Not tested SGI1 Protein 2e-68 55
intI1 AGK07071.1 IntI1 integrase Not tested SGI1 Protein 2e-69 55
unnamed ACF06155.1 class 1 integrase Not tested Tn5036-like Protein 5e-69 55
unnamed AAL08437.1 Tn21 integrase IntI1 Not tested SRL Protein 2e-68 55
EC042_4092 YP_006098375.1 integrase Not tested Tn2411 Protein 7e-69 55
intI1 AFV53119.1 IntI1 integrase Not tested AbGRI2-1 Protein 2e-69 55
intI1 AGK07098.1 IntI1 integrase Not tested SGI1 Protein 5e-69 55
intI1 ABZ01842.1 IntI1 Not tested SGI2 Protein 2e-68 55
intI YP_001844881.1 integrase Not tested AbaR20 Protein 3e-69 55
intI1 AGK36642.1 IntI1 integrase Not tested AbaR26 Protein 2e-69 55
intI1 ABB48427.1 IntI1 integrase Not tested SGI1 Protein 2e-69 55
intI CAJ77028.1 Integrase Not tested AbaR1 Protein 2e-68 55
intI1 YP_005797130.1 integrase Not tested AbaR4e Protein 3e-69 55
intI CAJ77082.1 Integrase Not tested AbaR1 Protein 2e-69 55
intI1 ACY75520.1 integrase Not tested Tn6060 Protein 2e-68 55
intI1 YP_005797145.1 integrase Not tested AbaR4e Protein 3e-69 55
intI1 ADZ05801.1 integrase Not tested AbaR19 Protein 2e-47 54
intI1 AFL65913.1 class 1 integrase Not tested SGI1-J6 Protein 6e-51 53
int1 YP_005160012.1 integrase Not tested Not named Protein 5e-56 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_01675 YP_004929029.1 putative integrase VFG1028 Protein 1e-68 55