Gene Information

Name : DSC_01640 (DSC_01640)
Accession : YP_004929022.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Virulence
Product : NAD-dependent aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 144961 - 146490 bp
Length : 1530 bp
Strand : -
Note : COG1012 NAD-dependent aldehyde dehydrogenases

DNA sequence :
ATGAATGCCGTCACCAGCACCAAGCCGCTGTCCACCGACCCGCAGTCCATCTTCAAGCCGCGCTACGCCAACTTCATCGG
CGGCAAGTGGGTCGAGCCCAAGGGCGGTGAATATTTCGACAACATCACCCCGATCACCGGCAAGGTCTTCACCCAGATCC
CGCGCTCGGGCAAGGACGACATCGAGGCGGCGCTGGATGCCGCCCATGCCGCCAAGACCGCCTGGGGCGAAACCTCGGCC
ACCGAGCGCAGCAACATCCTGCTCAGGATCGCCGACCGCATCGAACAGAACCTGGAGCTGCTGGCCTACGCCGAGACCTG
GGACAACGGCAAGCCGATCCGCGAGACCCTCAACGCCGACGTGCCGCTGTGCGCCGATCATTTCCGCTACTTCGCCGGCG
CGATCCGCGCCCAGGAAGGCGGCATCTCGCAGATCGACAAGGACACGGTGGCCTACCACTTCCACGAGCCGCTGGGCGTG
GTCGGCCAGATCATCCCGTGGAACTTCCCGCTGCTGATGGCGTGCTGGAAGCTGGCCCCGGCCCTGGCCGCCGGCAACTG
TGTGGTGATGAAGCCTGCCGAACAGACCCCGGCCTCGATCCTGGTGCTGATGGAAGTCATCGGCGACCTGCTCCCGGCCG
GGGTGCTCAACATCGTCAACGGCTTCGGCCTGGAAGCCGGCAAGCCGCTGGCCAGCAACCCGCGCATCGCCAAGATCGCC
TTCACCGGCGAGACCACCACCGGTCGGCTGATCATGCAGTACGCCAGCCAGAACCTGATCCCGGTGACCCTGGAGCTGGG
CGGCAAGTCGCCCAATGTCTTCTTTGCCGACGTGATGGCCGAGGATGACGATTTCCTGGACAAGGCGGTGGAAGGCTTCG
TGCTGTTCGCCTTCAACCAGGGTGAGGTCTGCACCTGCCCCTCGCGTGCATTGATCCAGGAGTCGATCTACGACAGGTTC
ATGGAGAAGGCGCTGGCCCGGGTGGCGGCGATCAAGCAGGGCAATCCGCTGGACCCCAACACCATGGTCGGCGCGCAGGC
CTCCGGCGAGCAGCTGGAAAAGATCCTGTCCTACATCGACATCGGCAAGCAGGAAGGCGCCCAGGTGCTGATCGGCGGTG
AGCAGAACAAGCTCGAGGGCGATCTGGCCGGCGGCTTCTACGTCAAGCCGACCGTGTTCAAGGGCCACAACAAGATGCGC
GTGTTCCAGGAGGAGATCTTCGGCCCGGTGGTCTCGGTGACCACCTTCAAGGACGAGGCCGAGGCGGTGGCCATCGCCAA
CGACACGCTCTATGGCCTGGGCGCCGGCGTGTGGAGCCGCGATGCCTCGCGCCTGTACCGCATGGGCCGCGCGATCCAGG
CCGGGCGGGTGTGGACCAACTGCTACCACGCCTATCCGGCGCATGCCGCCTTCGGTGGCTACAAGCAGTCGGGCATCGGC
CGCGAGAACCACAAGATGATGCTCGACCATTACCAGCAGACCAAGAACCTGCTGGTGAGCTACTCGCCGAAGAAGCTCGG
GTTCTTCTGA

Protein sequence :
MNAVTSTKPLSTDPQSIFKPRYANFIGGKWVEPKGGEYFDNITPITGKVFTQIPRSGKDDIEAALDAAHAAKTAWGETSA
TERSNILLRIADRIEQNLELLAYAETWDNGKPIRETLNADVPLCADHFRYFAGAIRAQEGGISQIDKDTVAYHFHEPLGV
VGQIIPWNFPLLMACWKLAPALAAGNCVVMKPAEQTPASILVLMEVIGDLLPAGVLNIVNGFGLEAGKPLASNPRIAKIA
FTGETTTGRLIMQYASQNLIPVTLELGGKSPNVFFADVMAEDDDFLDKAVEGFVLFAFNQGEVCTCPSRALIQESIYDRF
MEKALARVAAIKQGNPLDPNTMVGAQASGEQLEKILSYIDIGKQEGAQVLIGGEQNKLEGDLAGGFYVKPTVFKGHNKMR
VFQEEIFGPVVSVTTFKDEAEAVAIANDTLYGLGAGVWSRDASRLYRMGRAIQAGRVWTNCYHAYPAHAAFGGYKQSGIG
RENHKMMLDHYQQTKNLLVSYSPKKLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-154 65
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 1e-159 65
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 1e-159 65
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 1e-159 65
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 5e-159 65
ORF SG19 AAN62241.1 putative aldehyde dehydrogenase Not tested PAGI-3(SG) Protein 1e-70 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_01640 YP_004929022.1 NAD-dependent aldehyde dehydrogenase VFG0082 Protein 1e-154 65