Gene Information

Name : DSC_06815 (DSC_06815)
Accession : YP_004930055.1
Strain : Pseudoxanthomonas spadix BD-a59
Genome accession: NC_016147
Putative virulence/resistance : Virulence
Product : nucleotide sugar dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 1267364 - 1268644 bp
Length : 1281 bp
Strand : -
Note : COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase

DNA sequence :
ATGCCGCAGACCAACGCCAGTCCCAGGATCGCCATCATCGGGCTTGGCTATGTGGGGCTGCCGCTGGCCGTGGCCTTCGG
CCGGCAATATGAAACGGTCGGCTTCGACATCAGCGCTGCACGCGTGCGCGCCTTGCAGGCCCGCCAGGACCACACGCTGG
AAATCTCACCCGAGCAATGGAAGGCGGCTGGACGCCTCACCTGCACCGACGATGCCGCCCACCTGGCCGGCTGCGAGGTG
TTCATCGTCGCCGTGCCCACGCCGGTGGACGACTACAAGCGCCCGGACCTGGGGGCGCTGGAAGCAGCCAGCCGCACCGT
CGGCCGCGCCATCGGCCCCGGCGGCCTGGCGATCTTCGAATCCACGGTCTATCCCGGTGCCACCGAAGAGATCTGCGTGC
CGATCATCCAGGCCGAATCCGGGCTGGTGTTCAACCGCGATTTCCACGCCGGCTACAGCCCCGAACGCATCAACCCCGGC
GATCGCGAACACCGCCTGGAAACCATCGTCAAGGTGACCTCCGGCTCCACGCCCGAAGCGGCCGCGCGCGTGGATGCGCT
GTACCGCAGCATCGTCCAGGCAGGCACCCACCGCGCGCCCAGCATCCGGGTGGCCGAAGCGGCCAAGGTCATCGAGAACA
CCCAGCGCGACGTCAACATCGCCCTGGTCAACGAACTGGCCCTGCTGTTCCACCGCCTCGGCATCGACACCGGCGAGGTC
CTCGAGGCGGCCGGCACCAAGTGGAACTTCCTGCGCTTCAAGCCGGGCCTGGTCGGCGGCCACTGCATCGGCGTGGATCC
GTATTACCTGACCCACAAGGCGCAACATGTGGGCCACCATCCGGAAGTGATCCTGGCCGGGCGCCGCATCAACGATGGCA
TGGGCGCGCACGTGGCCCAGCGCACCATCAAGCTGATGGCCAGGCGCGGGCAGCCGATTTCCGGGGCGCGGGCACTGGTG
CTGGGCCTGGCCTTCAAGCAGGACTGTCCGGACCTGCGCAACACCAGGGTGATCGACATCGTCCAGGAATTGCAGCAGTA
CAACGTGTCGGTGGACGTGCACGACCCCTGGGTCGACGCGGACCAGGCCAGGCACGAATATGGCCTGGACCTGGTCCAAA
CGCCCGCACCCGGCCACTACGACGCGGTGATCCTGGCCGTGGCCCATCGCCAGTTCATCGCGCTCGGTGGCGCCGGGGTG
CGCGCCTTCGCCAAACCCTGCGGCACCTTGTTCGACGTGCAGCGCGTGCTGTCGCGCGAAGACGTCGACGACCGCCTCTG
A

Protein sequence :
MPQTNASPRIAIIGLGYVGLPLAVAFGRQYETVGFDISAARVRALQARQDHTLEISPEQWKAAGRLTCTDDAAHLAGCEV
FIVAVPTPVDDYKRPDLGALEAASRTVGRAIGPGGLAIFESTVYPGATEEICVPIIQAESGLVFNRDFHAGYSPERINPG
DREHRLETIVKVTSGSTPEAAARVDALYRSIVQAGTHRAPSIRVAEAAKVIENTQRDVNIALVNELALLFHRLGIDTGEV
LEAAGTKWNFLRFKPGLVGGHCIGVDPYYLTHKAQHVGHHPEVILAGRRINDGMGAHVAQRTIKLMARRGQPISGARALV
LGLAFKQDCPDLRNTRVIDIVQELQQYNVSVDVHDPWVDADQARHEYGLDLVQTPAPGHYDAVILAVAHRQFIALGGAGV
RAFAKPCGTLFDVQRVLSREDVDDRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-117 56
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-117 56
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 4e-110 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
DSC_06815 YP_004930055.1 nucleotide sugar dehydrogenase VFG0431 Protein 6e-118 56