Gene Information

Name : SCAT_p0146 (SCAT_p0146)
Accession : YP_004919438.1
Strain :
Genome accession: NC_016113
Putative virulence/resistance : Virulence
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 157129 - 157932 bp
Length : 804 bp
Strand : +
Note : -

DNA sequence : 
GTGCACACGTCACAGGACCTTCGCGGGGCGGAGGCGGTACGGCTGGAGGCCGTGTCGAAGTCCTACGGCCGAGGGAGCGG
CCGGGTGGCCGCGCTCCGCGGGCTCGGCATGAGCTTCGGTCACGGCACGTTCACCGCCGTGATGGGGCCGTCCGGATCCG
GCAAGAGCACCTTTCTGCACTGCGCGGCGGGGCTGGTCCGGCCCAGCTCCGGCAGGGTCACCGTCGGCGGCATCGACCTG
TCGGGCCTGGACGACGCCGAGTTGACCAGGTTGCGCCGGGATCGGATCGGCTTCGTCTTCCAGTCCTTCAACCTGCTGCC
GGCGCTGACGGTCAGTCAGAACATCGCGTTGCCGCTGCGGCTGGCCGGGCAGCGTCCGGACGAGGGTCTGGTCCGCGCCG
TCGTGCGGCGGGTGGGCCTGTCCGAGCGGATCGGTCATCTGCCGGCGCAGTTGTCCGGCGGGCAGCAGCAGCGCGTGGCC
ATCGCCCGTGCCCTGGTGACCCGTCCGACCGTCGTCTTCGCCGACGAACCCACCGGTGCCCTCGACACCCGGGCCGCCGC
GTCCGTCCTCACCCTGCTGCGCGAGTCCGTGGACACCGCGGGTCGGACGCTGGTCATGGTCACCCATGACCCGGTCGCCG
CCTCCTACGCCGACCGTGTGGTCTTCCTCGCCGACGGTGCCTTCGCCGGCGAACTGCACCGGCCGACCGCCGACGCGGTG
GCCGCCCGGATGACCCGGCTCGGCGCCTGGGAGGACGAGCCCCGGCACCGCAGCATGCCGCAGGCCCACGGGAGGCGTTC
CTGA

Protein sequence : 
MHTSQDLRGAEAVRLEAVSKSYGRGSGRVAALRGLGMSFGHGTFTAVMGPSGSGKSTFLHCAAGLVRPSSGRVTVGGIDL
SGLDDAELTRLRRDRIGFVFQSFNLLPALTVSQNIALPLRLAGQRPDEGLVRAVVRRVGLSERIGHLPAQLSGGQQQRVA
IARALVTRPTVVFADEPTGALDTRAAASVLTLLRESVDTAGRTLVMVTHDPVAASYADRVVFLADGAFAGELHRPTADAV
AARMTRLGAWEDEPRHRSMPQAHGRRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 2e-31 47
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-43 46
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-43 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-43 46
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-39 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAT_p0146 YP_004919438.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 6e-43 47
SCAT_p0146 YP_004919438.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 1e-43 45
SCAT_p0146 YP_004919438.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 2e-37 44
SCAT_p0146 YP_004919438.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 3e-42 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCAT_p0146 YP_004919438.1 antimicrobial peptide ABC transporter ATPase VFG2059 Protein 2e-12 41