Gene Information

Name : copB (MEALZ_0311)
Accession : YP_004915610.1
Strain : Methylomicrobium alcaliphilum 20Z
Genome accession: NC_016112
Putative virulence/resistance : Resistance
Product : ATPase P
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG2217
EC number : -
Position : 337092 - 339170 bp
Length : 2079 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology

DNA sequence : 
ATGAAACATCCGCACGAGCATAGTAAACATCAGTCGCCTCATGCCGAGGCCTCGAAGTCCGATAAAACCGACGACCATTC
GCATTCGGCCCACAAAAACCATGCCGGCCATGACAAGCACGCAGGCCATAGCGTGGAGATGTTTCGGGATAAATTTTGGC
TGACGTTGGTGCTGGCCGTCCCAACGCTGATTTGGAGCGAGGAACTGCAACGCTGGTTGTCGTATACGGCGCCGGCATTT
CCAGGGTCGAGCTACATCTCGGCCGTTTTCGGCACGCTGGTTTATTTTTACGGCGGTTGGGTATTTTTGCAAGGCGGTTG
GCGCGAATTGCAAAGCCGCCTGCCTGGCATGATGACCTTGATCTCGCTGGCGATCAGCGTCGCTTTTCTGTACAGCCTGG
CCGTCACGTTCGGTTTCAAAGGTCATGCGCTGTGGTGGGAGCTGGCATCTTTGGTGGCGATCATGCTGCTGGGACATTGG
ATAGAGATGCGTTCGATCTTCCAGGCCCAGGGTGCTTTGAAGGAATTGGCGAAGTTGCTGCCGGATACGGCACTAAGGCT
GGTCGATGAAGATAAAACCGAAGAGGTCACGGTCGACCGCTTGCAAGACGGCGATTTGTTGTTGATCCGCCCCGGCGCGG
CGGTTCCGGCCGACGGCATCGTCAAGAGGGGTAAAAGTTCGGTGAATGAGGCATTGATTACCGGCGAATCGAAGCCTGTG
CCGAAAGGCGAGGGCGATGAAGTAATTGCCGGCACGGTCAACGGCGAAGGCTCCTTGCGCATCGAAGTCACCGGCACCGG
AGACAAGACCGCTTTGGCCGGTATAATGCGCTTGGTCGATCAGGCCCAGACTTCACGCTCCCGTGCTCAGGCCTTGGCGG
ACCGCGCGGCGTTTTATCTGACGCTGGTCGCGATCGTTTCGGGCGCTTTGACTTTTATTGCGTGGTCTCTGGCCGGCGCG
ACGATGGATTTCACCGTGACGCGGGTTGTGACGGTGCTGGTCATTGCCTGTCCTCATGCCTTGGGGCTTGCCGTGCCGCT
CGTGATTGCGATTTCGACGACGTTGGGTGCGCGCGGCGGATTGTTGGTGCGCGATCGCCGGGGATTGGAAGAGGCGCGTA
ATCTGGATATCGTGGTGTTCGACAAGACCGGGACGCTGACCTTGGGCGAGCACCGCGTCGTCGAAACGATGACGGCCGAA
GGCGTCGAGTCCAACGAAGCGCTCCGGCTTGCGGCGGCAGTCGAACGCGATTCGGAGCATCCGATTGCGAGAGCCTTGCT
CAAGAGCGCCGAAGAAGTCGAAATTGAATGGCCCTCGGCCCAGGATTTTCAAGCAATCCCCGGCCGAGGCGTAGCGGCTG
TTGTCGAAGGGCGCAAACTCCAGGTGGGCGGGCCGGCCTTGCTAAACACGTTCGACAGTGAAATTCCGCAAGCCCTGGCG
GACGCCGCCGACCGCTTCGGCGAATCCGGCCGGGCGGCGATTTATCTCGCCGAGGACGACAGGGTTTTGGCGGTCTTTGC
GATCGCCGATGCGATTCGTCCCGTTTCCGGCGAAGCGGTGCGCCTGTTGCATGATGCCGGCATCGAAGTCGCGATGCTGA
CTGGCGATTCGCAAGCGGTTGCTAGAGCCGTGGCTAAGGAATTGAACATCGACACGGTGTTTGCTCAAGTGTTGCCCGAA
GACAAGGTAAAGCGTATCGAAGAGTTGCAGGCTCAAGGCAAACGTGTTGCGATGGTCGGCGACGGCGTCAACGATGCGCC
GGCCTTGTTGACCGCCGATGTCGGTATTGCGATCGGCGCCGGCACCGATGTCGCGGTCGAGGCCGGCGATGTGGTTTTAG
TGCGTTCGGATCCGCGTGACGTGTCGAGGATCGTCAACCTGAGCAAGGCGACCTATCGTAAGATGGTGCAGAATTTGTGG
TGGGCCGCGGGCTACAACATCGTCGCAATTCCGCTCGCGGCGGGCGTACTGGCATGGGCCGGAATCTTACTCGCGCCGGC
GGTCGGCGCGGTGCTGATGTCGGCCAGCACGGTGATTGTGGGGCTGAATGCCCAATTACTGCGTCGGGTGGAATTATAA

Protein sequence : 
MKHPHEHSKHQSPHAEASKSDKTDDHSHSAHKNHAGHDKHAGHSVEMFRDKFWLTLVLAVPTLIWSEELQRWLSYTAPAF
PGSSYISAVFGTLVYFYGGWVFLQGGWRELQSRLPGMMTLISLAISVAFLYSLAVTFGFKGHALWWELASLVAIMLLGHW
IEMRSIFQAQGALKELAKLLPDTALRLVDEDKTEEVTVDRLQDGDLLLIRPGAAVPADGIVKRGKSSVNEALITGESKPV
PKGEGDEVIAGTVNGEGSLRIEVTGTGDKTALAGIMRLVDQAQTSRSRAQALADRAAFYLTLVAIVSGALTFIAWSLAGA
TMDFTVTRVVTVLVIACPHALGLAVPLVIAISTTLGARGGLLVRDRRGLEEARNLDIVVFDKTGTLTLGEHRVVETMTAE
GVESNEALRLAAAVERDSEHPIARALLKSAEEVEIEWPSAQDFQAIPGRGVAAVVEGRKLQVGGPALLNTFDSEIPQALA
DAADRFGESGRAAIYLAEDDRVLAVFAIADAIRPVSGEAVRLLHDAGIEVAMLTGDSQAVARAVAKELNIDTVFAQVLPE
DKVKRIEELQAQGKRVAMVGDGVNDAPALLTADVGIAIGAGTDVAVEAGDVVLVRSDPRDVSRIVNLSKATYRKMVQNLW
WAAGYNIVAIPLAAGVLAWAGILLAPAVGAVLMSASTVIVGLNAQLLRRVEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH0105 YP_252020.1 hypothetical protein Not tested SCCmec Protein 5e-102 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copB YP_004915610.1 ATPase P BAC0629 Protein 4e-143 52
copB YP_004915610.1 ATPase P BAC0101 Protein 3e-91 44
copB YP_004915610.1 ATPase P BAC0383 Protein 4e-104 43
copB YP_004915610.1 ATPase P BAC0079 Protein 3e-124 42
copB YP_004915610.1 ATPase P BAC0183 Protein 1e-87 42
copB YP_004915610.1 ATPase P BAC0012 Protein 3e-84 41