Gene Information

Name : MEALZ_2418 (MEALZ_2418)
Accession : YP_004917687.1
Strain : Methylomicrobium alcaliphilum 20Z
Genome accession: NC_016112
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein TctD
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2766779 - 2767459 bp
Length : 681 bp
Strand : -
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pr : regulator

DNA sequence : 
ATGAATATTTTATTGATCGAAGATGATTCCGTTCTTACCGATGGATTGATTCATACGCTTAAAAAAACCGGTTACGTTGT
TACCGCCACCAAAAGCGGGCGTTATGCCGAGCAATTGGTAGAAGCACAAGATTTCGATTTGATTGTGCTCGACTTGGGGT
TGCCCGATATGGACGGTTTAGAATTATTGCGCAAATTTCGTAACCGCAAGGTTTCATTGCCAATATTGATTTTGACGGCA
CGGGAAAGTATGAACGACCGCATCGAGGGTATTCGTCAAGGTGCGGACGACTATATGACCAAACCTTTCGAGCTAATGGA
GTTGGAAGCGCGTATTCACGCTTTGATCAGGCGTTGTTATGGGGGCTTCAGCTATACCATCGAAGTGGGTCGTCTTTCGC
TCGATACTCAAAATAACCAAGTTTCCGCGGATGGTCAGTTACTGGTGTTATCGGCTCGAGAAGCGGCGGTTCTCGAAATT
TTGTTGTTACAAGCAGGCAAAGTGGTTTGCAAGGATCGTATCGCGCAGCGTTTGTCGGCGGACGGCGATGCATTGGCCGA
TAATGCGATCGAAGTATATGTACACCGCGTTCGAAAACGCATCGAACCTTACGACGCCGTTATACGGACAGTACGGGGTT
TAGGTTACTTGCTGGAGACGGGTAGCGATGGAGCAAAATAG

Protein sequence : 
MNILLIEDDSVLTDGLIHTLKKTGYVVTATKSGRYAEQLVEAQDFDLIVLDLGLPDMDGLELLRKFRNRKVSLPILILTA
RESMNDRIEGIRQGADDYMTKPFELMELEARIHALIRRCYGGFSYTIEVGRLSLDTQNNQVSADGQLLVLSAREAAVLEI
LLLQAGKVVCKDRIAQRLSADGDALADNAIEVYVHRVRKRIEPYDAVIRTVRGLGYLLETGSDGAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 8e-36 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MEALZ_2418 YP_004917687.1 transcriptional regulatory protein TctD NC_002516.2.879194.p Protein 3e-33 43
MEALZ_2418 YP_004917687.1 transcriptional regulatory protein TctD BAC0487 Protein 3e-36 42
MEALZ_2418 YP_004917687.1 transcriptional regulatory protein TctD CP000647.1.gene1136. Protein 2e-32 41
MEALZ_2418 YP_004917687.1 transcriptional regulatory protein TctD BAC0530 Protein 2e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
MEALZ_2418 YP_004917687.1 transcriptional regulatory protein TctD VFG0473 Protein 7e-40 42