Gene Information

Name : vipA (MEALZ_1897)
Accession : YP_004917177.1
Strain : Methylomicrobium alcaliphilum 20Z
Genome accession: NC_016112
Putative virulence/resistance : Virulence
Product : Vi polysaccharide biosynthesis protein vipA/tviB
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : -
Position : 2175700 - 2176971 bp
Length : 1272 bp
Strand : +
Note : -

DNA sequence : 
ATGTTAGAAAATGTCAAGTTGGGAATGATCGGTCTCGGTTATGTCGGTCTGCCCTTAGCCGTTGAATTCGGGAAGAAATA
CCCGACAATCGGTTTCGATATCAATGCAGAGCGTATCAAAGAATTGCAAAACGGCAGCGATCACACGCTTGAAGTCAGTG
AGGAAGAATTAAAAGAAGCCGTTCATTTGACCTACACCTCATCATCCGAGGAAATCAAAGCCTGCAATATCTACATCGTT
ACGGTGCCGACGCCGATCAATGAATATAAACAGCCCGACTTGAGTCCGCTGGAAAAAGCCAGCACTCTGCTGGGCGGACT
GATCAAACCCAACGATATCGTTATTTATGAATCGACCGTTTACCCCGGTGCGACCGAGGAAGTTTGCGTGCCGATTCTGG
AAAAAATATCGGGACTGACATTCAATCAAGATTTCTTTGTCGGTTACAGCCCGGAACGGATTAATCCCGGCGACAAAGAA
CACCGAGTCACCAATATTCTCAAAGTGACCTCCGGTTCGACTCCCGAAATCGCCGACCGCATCGACCGGCTTTATCAAAG
CATCATCACAGCGGGCACACACAAGGCCAGTAGTATTAAAGTCGCCGAAGCGGCCAAAGTTATCGAGAATACGCAACGCG
ACCTGAATATCGCATTGATCAATGAATTAGCGATCATCTTCAATAAGCTCGGCATCGATACCGAAGAAGTGTTGTTGGCC
GCCGGTACCAAATGGAATTTTTTACCGTTCCGGCCCGGATTGGTCGGTGGACATTGCATCGGAGTCGATCCCTACTACTT
GACTCATAAGGCGCAAGCGATCGGTTACAATCCCGAAGTCATCTTGTCGGGACGCCGCATCAACGACGGCATGGGCGAAT
ATGTCGTGTCGCAATTAATCAAATTGATGCTGAAAAAACGCATCCATATCAAAGATTCCGATGTGCTGATAATGGGCTTG
ACTTTCAAGGAAAATTGCCCTGATTTGCGCAATACCCGTGTCGTCGATATCGTCAAAGAACTGCAAAGTTACGGCGTTAA
CGTGCATGTTTACGATCCTTGGATCGATCCGGCAGAAGCGATGGAAGAATACGGCATAACGACCATCGACAAGGCGGAAG
TCGGCTGTTACGATGCGATCCTCTTGGCCGTTGCGCATGAGCAATTCAAGCGAATGGATATCACTTCAATCAAAGCGCTG
GGTAAAAAAGAGTCGGTGATTTACGATTTGAAATACGTTTTTCCGGCTGAACTGACTGACGCACGTTTGTAA

Protein sequence : 
MLENVKLGMIGLGYVGLPLAVEFGKKYPTIGFDINAERIKELQNGSDHTLEVSEEELKEAVHLTYTSSSEEIKACNIYIV
TVPTPINEYKQPDLSPLEKASTLLGGLIKPNDIVIYESTVYPGATEEVCVPILEKISGLTFNQDFFVGYSPERINPGDKE
HRVTNILKVTSGSTPEIADRIDRLYQSIITAGTHKASSIKVAEAAKVIENTQRDLNIALINELAIIFNKLGIDTEEVLLA
AGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYNPEVILSGRRINDGMGEYVVSQLIKLMLKKRIHIKDSDVLIMGL
TFKENCPDLRNTRVVDIVKELQSYGVNVHVYDPWIDPAEAMEEYGITTIDKAEVGCYDAILLAVAHEQFKRMDITSIKAL
GKKESVIYDLKYVFPAELTDARL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-131 67
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 1e-131 67
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 1e-104 58

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
vipA YP_004917177.1 Vi polysaccharide biosynthesis protein vipA/tviB VFG0431 Protein 5e-132 67