|
Name : lysS (SCAT_5412) Accession : YP_004914903.1 Strain : Streptomyces cattleya NRRL 8057 Genome accession: NC_016111 Putative virulence/resistance : Unknown Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 5826599 - 5829901 bp Length : 3303 bp Strand : + Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology DNA sequence : ATGGGCAGCGACGGCCGCACCACCTCGGTCACCCGGCTCCACCGGGTCACCGCACGCGTCCCCGCCTGGGTCGGCGGCTT CTTCGGCCTGCTCGGCACGGCCTGCGCGCTCACCACGCTGATCAGCCCGCTGCGCTTCCTGCTCGATCCGGTGCTGCGGG TGGTCAACGAATGGCTGGTGCCCGCCTCCCCGAACCTGGCGTACGCGGTCTTCCTGCTGCTGCTCGCCGGCGCGCTGCTG GCCCGCAAACGGGCCGCGTGGTGGGTGGTCACCTTCTACACCGCGCTGCTGCTGGCCGCCGAGGCGATCACGGCGGACCT GGTGGGCGTGGTCGAGGCGGTGGTCTCGCTGACCATCACCGGGGTCGTGCTGGCGGTGCTGCTGGTGTCCCGGTCGCAGT TCCCGGCCCGGGTGCGGCGCGGCGCGTTCTGGCGGGCGCTGGGCGTCCTGGTGCTGGGGCTGGCGGTCTTCGTGCTGATC GGCTGGGGGCTCACCGAACTCTTCCCCGGCGGGCTGCCGCCGGGGGTACGGCTGCTGTGGGCGGCCAACCGGGTCTGCGG CGGGCTGATCAGCACCCGGCACTTCAACCACCACCCGCCGGTCGCCCTCGGCTTCCTGCTCGGTCTCTTCGGCGCGCTGG CGCTGCTCAACGCCGCCGCCGTGCTCTTCCGCTCGCAGAAGGCCCAGGCCGGACTCCACGGCGACGAGGAGACCCGGATC CGCGCCCTGCTCGCCCAGTACGGCGGCCAGGACTCGCTGGGCTACTTCGCCACCCGCCGCGACAAGGCCGTCGTCTTCGC CCCCGGCGGCGGCGCCGCGGTCACCTACCGGGTCGAGGCCGGGGTCTGCCTGGCCAGCTCCGACCCGGTGGGGGAGCACG GCGCCTGGGGCCCGGCCATCGACGCCTGGCTCGACCTCGCCCGCCGCTACGCCTGGACCCCGGCCGTGATGGGCGCCGGC GAGGAAGGCGCCAAGGCGTATGCACGGGCCGGCCTCAACGCCCTGCAACTGGGTGACGAGGCCGTCCTGCACACCGCCGA GTTCGACCTGAACGGCCGCGAGATGCGGGTCACCCGGCAAGCGGTCAACCGGGTCCGGCGCACCGGCATGACACTGCGCG TCCGCCGCCACGGCGCGCTGACCCCGCAGGAGATGGCCGAGGTCGTCGCGCTCGCCGACGCCTGGCGCGACACCGAGGTG GAACGCGGCTTCTCCATGGCGCTCGGCCGCCTCGGCGACCCCGCGGACGGCGACTGCCTGCTCGCCGAGGCGGTCACCGC GCAGGGGCGCACCGTGGCGCTGCTCTCCTTCGTCCCCTGGGGACGCGACGGCATCTCGCTGGACGTGATGCGCCGCGACC GGGCCGCGCCCAACGGCGTCATGGAGTTCATGGTCGCCGAACTGGCCGGCCACGCCACACGCCTGGGCATCCGGCGCATC TCGCTCAACTTCGCCGTCTTCCGGGCCGTCTTCGAGCAGGGGGCACGCATCGGCGCCGGCCCGGTGCTGCGGGTCTGGCG CAGGCTGCTGCTGTTCTTCTCCAAGTGGTGGCAGCTGGAGGCGCTCTACCGGTCCAACGTCAAGTACCGCCCCGAGTGGG TGCCGCGCTTCCTGTGCTTCGCCGAGGCCCGGCAGATCGCCCGGATCGGGCTGGCGGCCGGCATCGCCGAGGGCTTCGTG GAGTTCCCCCGGTTCGGCCGCCGCCGTCCCCCCTCCGGGGTGCGCCCCCCGGTCAGCGCCGCCCCGCTGCCCCCGCTCAC CGCCCGCGAACTGGCCCTGCTCGCCGGGGAACGGGCCACCACCACCGTCGAGGACGTCTCCGCCCTGCCCGAACAGGTAC GGGTACGCCGGGCCAAGCTCGACCGGCTGCGCGAGCAGGGCACCGACCCGTACCCGGTGCTCGCCGGGCGCACCGACACC CTCGGCCAGGTCCTCGCCCGCCACCCCGCGCTGCCCCCCGGCACCAGGACCGGCCACCAGGTCACCGTCGCCGGCCGCGT GCTGCGCAGCCGCGACTTCGGCGGCGTGGTCTTCGCCGTGCTGCGCGACTGGTCCGGCGACCTCCAGATCGCGCTCACCC GGGCCGACTCCGGCGAGGAGGAGCTGCGCCGCTTCACCTCCGACACCGACCTCGGCGACCATCTGGAGGTCACCGGTGAG GTGGGCGCCAGCGACCGCGGCGAGCCCACCGTCTTCGTCCACTCCTGGCGCATGACGGCCAAGTGCCTGCGCCCGCTGCC CGACAAGCGCCGCGGCCTGACCGACCCGGAGGCCCGGGTCCGCCGCCGCTACGTCGACCTGGTGGTCCGCCCCGAGGCCC GCGAGGTGCTGCGGGTGCGCGGCGCGGCGGTGCGGGCGTTGCGCGAACAACTCGCCGCCCGGGACTACCTGGAGGTGGAG ACCCCCATGCTCCAGCAGGTGCACGGCGGCGCCAACGCCCGTCCGTTCACCACCCACATGCACGCCTACGGCCTCGACCT GTACCTGCGCATCGCCCCCGAGCTGTATCTCAAACGACTCTGCGTCGGCGGCGTGGAGCGCGTCTTCGAACTCGGCCGCA CCTTCCGCAACGAAGGCACCTCCTACAAGCACAACCCCGAGTTCACCATGCTGGAGGCGTACCAGGCGTTCGCCACTTAC GACGACATGCTCCAGCTGACCCGGGAGCTGATCCAGGCCGCCGCCACCGCCGCGTACGGCACCCCCGTCGCGCGCCGCAC CGCCCCGGACGGCACCGCGGTGGAGTACGACATCTCCGGCGAGTGGCCGGTGCGCACCGTCTACGGCGCGCTCGGCGAGG CGCTGGGCGAACCGGTGGGCCCGGACACCCCGGTGCACACCCTGATCGAGCTGTGCGACCGGGCCGGGGTACCGCACCAG CCGGGGATGACCCACGGCGAGCTGGTGCTGGAGATGTACGAGCGCCTGGTGGAGGAGGCCACCACGCTGCCCACGTTCTA CAAGGACTTCCCCACCGACGTCTCCCCGCTGACCCGGCAGCACCGCACCGACCCCCGGCTCGCCGAACGCTGGGACCTGG TCGCCTTCGGCACCGAACTGGGCACCGCCTACTCGGAGTTGACCGACCCGGTGGAACAGCGCAAACGCCTCACCAAGCAG TCCCTGCTGGCGGCCGGGGGCGACCCGGAGGCGATGGAGGTCGACGAGGACTTCCTGACCGCCCTGGAGTACGCCATGCC GCCCACCGGCGGGCTCGGGCTCGGCGTCGACCGGCTGGTGATGTTCCTGACCGGGCTGTCGATCCGCGACACGCTCCCGT TCCCGCTCGTCCGCCGTCGCTGA Protein sequence : MGSDGRTTSVTRLHRVTARVPAWVGGFFGLLGTACALTTLISPLRFLLDPVLRVVNEWLVPASPNLAYAVFLLLLAGALL ARKRAAWWVVTFYTALLLAAEAITADLVGVVEAVVSLTITGVVLAVLLVSRSQFPARVRRGAFWRALGVLVLGLAVFVLI GWGLTELFPGGLPPGVRLLWAANRVCGGLISTRHFNHHPPVALGFLLGLFGALALLNAAAVLFRSQKAQAGLHGDEETRI RALLAQYGGQDSLGYFATRRDKAVVFAPGGGAAVTYRVEAGVCLASSDPVGEHGAWGPAIDAWLDLARRYAWTPAVMGAG EEGAKAYARAGLNALQLGDEAVLHTAEFDLNGREMRVTRQAVNRVRRTGMTLRVRRHGALTPQEMAEVVALADAWRDTEV ERGFSMALGRLGDPADGDCLLAEAVTAQGRTVALLSFVPWGRDGISLDVMRRDRAAPNGVMEFMVAELAGHATRLGIRRI SLNFAVFRAVFEQGARIGAGPVLRVWRRLLLFFSKWWQLEALYRSNVKYRPEWVPRFLCFAEARQIARIGLAAGIAEGFV EFPRFGRRRPPSGVRPPVSAAPLPPLTARELALLAGERATTTVEDVSALPEQVRVRRAKLDRLREQGTDPYPVLAGRTDT LGQVLARHPALPPGTRTGHQVTVAGRVLRSRDFGGVVFAVLRDWSGDLQIALTRADSGEEELRRFTSDTDLGDHLEVTGE VGASDRGEPTVFVHSWRMTAKCLRPLPDKRRGLTDPEARVRRRYVDLVVRPEAREVLRVRGAAVRALREQLAARDYLEVE TPMLQQVHGGANARPFTTHMHAYGLDLYLRIAPELYLKRLCVGGVERVFELGRTFRNEGTSYKHNPEFTMLEAYQAFATY DDMLQLTRELIQAAATAAYGTPVARRTAPDGTAVEYDISGEWPVRTVYGALGEALGEPVGPDTPVHTLIELCDRAGVPHQ PGMTHGELVLEMYERLVEEATTLPTFYKDFPTDVSPLTRQHRTDPRLAERWDLVAFGTELGTAYSELTDPVEQRKRLTKQ SLLAAGGDPEAMEVDEDFLTALEYAMPPTGGLGLGVDRLVMFLTGLSIRDTLPFPLVRRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lysX | YP_003784331.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-157 | 44 |
| lysS1 | YP_005686365.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-157 | 44 |
| lysS1 | YP_005682181.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 1e-156 | 44 |
| lysS1 | YP_005684273.1 | lysyl-tRNA synthetase | Not tested | PiCp 7 | Protein | 2e-157 | 44 |
