Gene Information

Name : KKY_2313 (KKY_2313)
Accession : YP_004900072.1
Strain : Pelagibacterium halotolerans B2
Genome accession: NC_016078
Putative virulence/resistance : Virulence
Product : manganese ABC transporter ATP-binding protein SitB
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2302726 - 2303499 bp
Length : 774 bp
Strand : +
Note : -

DNA sequence : 
ATGACCCCCGACCTCCACGAACCCGGCCTTGCCGTTCATGTGGAGGACCTCACGGTCTCCTACCAGTCAAAGCCGGTGCT
CTGGGATATCGATTTCGATATCCCGCCCGGCGTCATGGCGGCAATTGTCGGGCCTAATGGCGCGGGCAAATCCACGCTGA
TCAAATCGATCCTCGATCTGATAAGGCCCACCGCCGGCCACGTCACCATCCATGGCCGCCCCTATTCCGATCAGCGCCGC
AAGGTCGGCTACGTCCCCCAACGCTCCAGCGTCGATTGGGATTTCCCCACCACAGCCCTCGATGTCGTGACCATGGGGCT
TTACGGCCAGCTCGGCTGGCTGCGACGCCCCGGCCGCACCGAACACGACAGGGCAATGGCCGCGCTTGCCCGCGTCGGCA
TGTCCGATTTCGCCCACCGCCAGATCAGCCAGCTTTCCGGTGGCCAGCAACAGCGCGTGTTCATCGCCCGGGCGCTGGTA
CAGGATGCCGATGTCTATTTCCTCGACGAACCCATGGCCGGGGTCGACGCGACGACCGAACGCGCCATCGTCAAAATCCT
CCACGCCCTGCGCGATGCGGGCAAGACGGTGATCGTCGTCCACCACGATCTGCAGACCGTCCGCGATTATTTCGACTGGA
TGGTGATCTTGAACGTCCGCGTCATCGCACAGGGCCCGGTCTCCGAGGTCTATACCCCGGAAAACCTGCGCAAGGCCTAT
GGCGGCCAGATCGCGCTGATCGACCGCGACGCCACCCTCGAAACCGCCCCCTGA

Protein sequence : 
MTPDLHEPGLAVHVEDLTVSYQSKPVLWDIDFDIPPGVMAAIVGPNGAGKSTLIKSILDLIRPTAGHVTIHGRPYSDQRR
KVGYVPQRSSVDWDFPTTALDVVTMGLYGQLGWLRRPGRTEHDRAMAALARVGMSDFAHRQISQLSGGQQQRVFIARALV
QDADVYFLDEPMAGVDATTERAIVKILHALRDAGKTVIVVHHDLQTVRDYFDWMVILNVRVIAQGPVSEVYTPENLRKAY
GGQIALIDRDATLETAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 7e-51 45
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 7e-51 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-51 45
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 2e-51 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 1e-51 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 3e-48 43
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 4e-48 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KKY_2313 YP_004900072.1 manganese ABC transporter ATP-binding protein SitB BAC0400 Protein 2e-75 61
KKY_2313 YP_004900072.1 manganese ABC transporter ATP-binding protein SitB BAC0350 Protein 9e-52 45
KKY_2313 YP_004900072.1 manganese ABC transporter ATP-binding protein SitB BAC0440 Protein 8e-49 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KKY_2313 YP_004900072.1 manganese ABC transporter ATP-binding protein SitB VFG0526 Protein 8e-52 45