|
Name : lysS (Acin_0874) Accession : YP_004896243.1 Strain : Acidaminococcus intestini RyC-MR95 Genome accession: NC_016077 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase class II Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 891795 - 893768 bp Length : 1974 bp Strand : + Note : COG1190 DNA sequence : ATGTCGGAAGAATTGAAGAACCAGCCCGCTGTGGATACGGGCGCTGCTGAAGAAGTCAGCGAACAAGTCGCTGTCCGTAT GGACAAGATGCATAAGCTGGAAGAAAAGGGTATCTTGCCTTTTGGTCATGCCTATAAGGTGACCCATCATAATAAAGAAG TCCATGACAAGGTCAAGGAACTGGAAGAAAAGGGCGCTGAAGTCCGTGTTGCCGGACGGTTGACGGCTATCCGCGGTCAC GGCAAGACCGCTTTTATGGACCTTCTCGATAAGTCTGGTAAGATTCAGCTATATGTCCGCAAGGATGAGTTGGGAGAAGA TAATTACAGTGTGGTCAAACTCCTGGACATTGGGGATATCGTCGGCGTAGAAGGCGAAGTCTTCACGACCCATATGGGTG AACCATCCATTCGCGTGAAAAAGCTCGAATTCCTTTCTAAGGCCCTGAAACCGCTGCCGGAAAAATGGCACGGCCTCAAG GACAAGGAAATCCGTTATCGTCAGCGCTATGTGGATCTCATTGTAAACCCCGAAGTCCGCGACACATTTGTCAAACGTAC GGAAATCATCAAAAGTATCCGCAATATCCTCGATAATGAAGGCTACCTTGAAGTGGAAACGCCGGTCCTCAATACTATTT CCGGCGGGGCTACGGCCCGTCCTTTTGTGACCCACCATAATGCCCTTGATATCGATTTGTACCTGCGCATTGCGACGGAA TTGAACCTGAAGCGCCTTATTGTAGGGGGTCTGGAACGGGTTTATGAAATTGGCCGCATTTTCCGCAATGAAGGGATGGA TATCAAGCATAACCCGGAATTTACGTCCATCGAGCTTTATGAAGCATATGGTGACTATCAAACCATGATGGATATTACGG AAAAACTCGTGTCAGAAACGGCGCAGCGCGTCTTGGGCACCATGAAAATCACCTATCAGGGCAAGGAAATCGACTTGACT CCGCCTTGGCCTCGTATGACCATGGTTGAAGCCGTTAAGAAATTCAGCGGTTATGACTTTACGGGTGTCCGCGATGTTGA AACGGCCCGCAAGCTGGCTGCTGATGCCAACGTCGAAATCCAGCCGACCTTCGGCCCTGGCAAGATTCTGGAAGCCTTCT TTGATGAATTCGTTGAAAAGAACCTCATTCAGCCGACCTTCATCATGGGTCATCCTAAAGAAATCTCGCCGCTTGCTAAG AGCAGCCTTGCTGATCCAGAAGTCACGGATCGTTTTGAAGGCTTCATCAACGGTTCTGAAATCTGCAATGGTTTTACGGA ACTCAACGATCCAATCGACCAGAAGGAACGCTTTGAAAAACAGGTGGAAGAACGCAATAACGGCGATGATGAAGCCGGTA TGATGGACGAAGACTTCATCAATGCCCTCATGCACGGCCTGCCTCCGACGGGCGGTCTGGGTATTGGAATTGACCGTCTT GTCATGCTGCTTACCAATTCGGCTTCCATCCGCGATGTCCTGCTCTTCCCGACCATGAAGCCCCTGGGACTCGAAAAGAA AGACGAATCTGTGGCAGCTGCTCCAGCCGCGCCCGCTGAAACGGTGGATGCTCCGCAGACCGTGGCGCTGGAAAAGATTG ATTTTTCCAATGTGACCATTGAACCGCTCTTCAAGGATTTCGTTGATTTTGATCAGTTTGCTGGCTGCGACTTCCGGGTA GTGAAAGTCAAGGACTGTTTTGAAGTGCCTAAGAGCAAGAAACTTCTCCAGTTCACACTCGATGACGGAACGGGTACGGA CCGGACCATCCTGTCGGGCATCAAGGCATACTATCAGGCGGAGGATCTTATCGGCAGGACCCTCGTTGCCATTGTCAACT TGCCGCCGCGCAAGATGATGGGCATCGAATCCTGTGGGATGCTGTTAAGCGCCGAACATAATGAAGGGGAAGAACGCAAA CTGAACCTTCTCATGCTTGATCCCCATATTCCGGCTGGGGCCAAGCTCTGCTAA Protein sequence : MSEELKNQPAVDTGAAEEVSEQVAVRMDKMHKLEEKGILPFGHAYKVTHHNKEVHDKVKELEEKGAEVRVAGRLTAIRGH GKTAFMDLLDKSGKIQLYVRKDELGEDNYSVVKLLDIGDIVGVEGEVFTTHMGEPSIRVKKLEFLSKALKPLPEKWHGLK DKEIRYRQRYVDLIVNPEVRDTFVKRTEIIKSIRNILDNEGYLEVETPVLNTISGGATARPFVTHHNALDIDLYLRIATE LNLKRLIVGGLERVYEIGRIFRNEGMDIKHNPEFTSIELYEAYGDYQTMMDITEKLVSETAQRVLGTMKITYQGKEIDLT PPWPRMTMVEAVKKFSGYDFTGVRDVETARKLAADANVEIQPTFGPGKILEAFFDEFVEKNLIQPTFIMGHPKEISPLAK SSLADPEVTDRFEGFINGSEICNGFTELNDPIDQKERFEKQVEERNNGDDEAGMMDEDFINALMHGLPPTGGLGIGIDRL VMLLTNSASIRDVLLFPTMKPLGLEKKDESVAAAPAAPAETVDAPQTVALEKIDFSNVTIEPLFKDFVDFDQFAGCDFRV VKVKDCFEVPKSKKLLQFTLDDGTGTDRTILSGIKAYYQAEDLIGRTLVAIVNLPPRKMMGIESCGMLLSAEHNEGEERK LNLLMLDPHIPAGAKLC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-103 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004896243.1 | lysyl-tRNA synthetase class II | VFG1668 | Protein | 2e-103 | 46 |
