Gene Information

Name : TEH_09050 (TEH_09050)
Accession : YP_004886396.1
Strain : Tetragenococcus halophilus NBRC 12172
Genome accession: NC_016052
Putative virulence/resistance : Virulence
Product : OmpR family two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 906709 - 907395 bp
Length : 687 bp
Strand : +
Note : -

DNA sequence : 
ATGAGCGGTATTCTAATAATTGAAGACGAGAAAAATTTAGCTCGGTTTGTTGAATTAGAATTAAAGCATGAAGGTTACGA
TACCGAGGTTCATTATAATGGAAGAACTGGTTTAGACGCAGCGTTAAATAACGACTGGGATGCAATTTTGCTTGATTTGA
TGTTACCCGAGTTAAACGGCTTAGAAATATGTCGTAGAGTTCGTCAAATAAAAAATACACCTATTATTATGATGACTGCT
CGTGACTCGGTGATCGATCGAGTTTCTGGTTTAGATCATGGTGCAGATGACTATATTGTTAAACCTTTTGCCATTGAGGA
ACTTTTGGCACGGTTACGAGCTTTATTGCGTCGCATTGATATTGAAGGAGACAAAAATTCTGGCAAACAGACGACGCTTA
ATTATTGTGATTTAGTTATAGAAAAAGAAAATCGTGTCGTAAGACGTGGCTCAGAAGTTATTGAGCTAACAAAACGAGAA
TACGAACTTTTACTAACTTTAATGGAAAATGTAAATGTTGTTTTAGCAAGAGACGTGTTGCTAAAAAAAGTTTGGGGATA
TCAGACAGAAATCGAAACAAACGTTGTGGATGTTTATATTCGTTATTTGCGTAATAAGATAGATCTCCCGGATGAAGAAA
GTTATATACAAACAGTACGAGGTACAGGGTATGTGATGCGCTCGTGA

Protein sequence : 
MSGILIIEDEKNLARFVELELKHEGYDTEVHYNGRTGLDAALNNDWDAILLDLMLPELNGLEICRRVRQIKNTPIIMMTA
RDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIEGDKNSGKQTTLNYCDLVIEKENRVVRRGSEVIELTKRE
YELLLTLMENVNVVLARDVLLKKVWGYQTEIETNVVDVYIRYLRNKIDLPDEESYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-26 43
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 6e-27 42
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-27 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TEH_09050 YP_004886396.1 OmpR family two-component response regulator HE999704.1.gene1528. Protein 9e-78 78
TEH_09050 YP_004886396.1 OmpR family two-component response regulator NC_013450.8614146.p0 Protein 3e-48 55
TEH_09050 YP_004886396.1 OmpR family two-component response regulator NC_002951.3238224.p0 Protein 3e-48 55
TEH_09050 YP_004886396.1 OmpR family two-component response regulator NC_007793.3914065.p0 Protein 3e-48 55
TEH_09050 YP_004886396.1 OmpR family two-component response regulator NC_002758.1121390.p0 Protein 3e-48 55
TEH_09050 YP_004886396.1 OmpR family two-component response regulator NC_010079.5776364.p0 Protein 3e-48 55
TEH_09050 YP_004886396.1 OmpR family two-component response regulator NC_002952.2859858.p0 Protein 3e-48 55
TEH_09050 YP_004886396.1 OmpR family two-component response regulator NC_007622.3794948.p0 Protein 3e-48 55
TEH_09050 YP_004886396.1 OmpR family two-component response regulator NC_003923.1003417.p0 Protein 3e-48 55
TEH_09050 YP_004886396.1 OmpR family two-component response regulator AE015929.1.gene1106. Protein 1e-44 54
TEH_09050 YP_004886396.1 OmpR family two-component response regulator BAC0308 Protein 3e-29 41
TEH_09050 YP_004886396.1 OmpR family two-component response regulator BAC0083 Protein 6e-27 41
TEH_09050 YP_004886396.1 OmpR family two-component response regulator BAC0197 Protein 6e-27 41
TEH_09050 YP_004886396.1 OmpR family two-component response regulator AE000516.2.gene3505. Protein 7e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TEH_09050 YP_004886396.1 OmpR family two-component response regulator VFG1390 Protein 3e-35 43
TEH_09050 YP_004886396.1 OmpR family two-component response regulator VFG1702 Protein 4e-27 43
TEH_09050 YP_004886396.1 OmpR family two-component response regulator VFG1563 Protein 3e-27 42
TEH_09050 YP_004886396.1 OmpR family two-component response regulator VFG0596 Protein 2e-27 41
TEH_09050 YP_004886396.1 OmpR family two-component response regulator VFG1389 Protein 2e-30 41