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Name : clpC (TEH_00670) Accession : YP_004885558.1 Strain : Tetragenococcus halophilus NBRC 12172 Genome accession: NC_016052 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit ClpC Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 72862 - 75354 bp Length : 2493 bp Strand : + Note : - DNA sequence : ATGGATGAACTATTTACTCAGCGCGCTAAAGAAGTATTACAAATCGCCCAGGAAGAAGCAAAACGTTTTAAACATCAAAC CGTAGGATCAGAACATGTTTTACTAGCCTTATTAATTGAACCCAATGGTATTGCCGGAAAAACATTACGTGAAATGAATG TTAATGAAAATGATATTCGTGAAGAAATTGAACACTTAACAGGTTATGGCACGATGACTAGTTATCCGGTAAGTGGCTAT TTACCTTATTCGCCAAGAGCTAGACAAATTTTTGCCTATGCAGGTGATGAAGCAAAGCGTTTAGGCTCATCACAAGTTGG GACAGAACACTTACTTTTAGGGTTATTACGTGATGAAGAAATCTTAGCTTCGCGTATTATGTTGAACTTAGGCCTAAGTT TAGCGAAAATGCGTCAACTCTTAAAGAAAAAAATGGGTGTGAACCAAAATAAAAGTGCAAATGGTGCAAACCGACGTCGT CCAGCTCAAGGAAGACAGCAACAAGCACAAGAAGGCACCCCGACTTTGGATTCACTTGCACGTGATTTAACAAAATTAGC TCGCGAAAAACGTTTAGACCCTGTTGTTGGTCGTGATAAAGAAGTGAAGCGTCTTATTCAAATATTAAGTCGTCGTACCA AGAATAATCCTGCTTTGGTAGGTGAACCAGGTGTTGGTAAAACAGCGATTGCTGAAGGTTTAGCGCAAAAAATTAATAAT GGTGAAGTTCCGCAAGATATGCAGTCAAAACGACTAATGATGTTAGATATTGGTGCATTAGTTGCTGGAACAAAATATCG TGGCGAGTTTGAAGATCGCATGAAAAAAATTATTGATGAGATTTATCAAGATGGACAAATTATTTTGTTTATTGACGAAT TACACACTTTAATTGGTGCTGGAGGAGCAGAAGGTGCCATCGATGCTTCTAATATCTTAAAACCAGCACTTGCCCGTGGC GAGTTACAAACCATTGGAGCGACAACCTCTGATGAGTATCAAAAATATATCGAAAAAGATTCAGCATTAGAACGTCGTTT TGCCAGAGTTCAGGTAGACGAGCCAACACCTGATGATGCAGTAGAAATCTTAGGAGGGCTACGGGCTCGTTATGAAAAGC ATCATAATGTTGAAATTACTGATGAGGCATTACGAGCTTGTGTTCAGTTTTCTGTTCGTTACATTAATGGAAGACAATTA CCGGATAAAGCAATCGACTTAATGGATGAGTCAGCTGCTAAAGTTCGTTTGGACCAGTCGGATGAAGTTTCAGAAACAGC TGTCGTTCAGGATCAATTGCTGGAAGTGACAGAAGAAAAAGAAGCAGCGATTAGAAATCAAGATTTTGAAAAAGCAGCTA GTTTACGCAAACAAGAACAAGCATTGAATAAACAACTTCAGGAGGTATCTTATAAAGAAGCTAAAGCAGCTTCTGGTTTT ACCGATAAAGTGACAGAAGAAGATGTTGCCGCTGTTGTGTCACAATGGACAGGTGTACCGCTAGAGCAAATGGAGAAAAA AGAAAGTCAACGTTTGCTAGATTTGGAAAAAGATCTGCATGAACGTGTTGTCGGACAAGATGAAGCAGTAAATGCAGTAG CTCGTTCTATTCGACGTGCTCGTAGTGGATTAAAAGATCCAAATCGTCCAATTGGTTCTTTCATGTTTTTAGGACCAACA GGGGTTGGGAAAACTGAACTAGCTAAAACATTGGCTGAATCCATGTTTGGTGAAGAAGATGCTTTGATTCGTTTAGACAT GAGTGAGTATATGGAAAAATACAGTACGAGTCGTTTGATCGGTTCACCTCCAGGTTATGTTGGTTATGATGAAGGAGGTC AATTAACCGAAAAAGTTCGTTCAAAACCTTACTCTGTAATTTTACTTGATGAAGTTGAAAAGGCGCATCCAGAAGTTTTT AATACCTTATTACAAGTATTGGATGATGGACAATTGACAGATTCAAAAGGACGTTCTGTTGATTTTCGTAATACGATCTT GATTATGACTTCAAACATCGGTGCTCAAGAAATACGTGAAGAAACAAATGTTGGCTTCAATGTAGTAGATGTCAAACAAG ATCATGAAGCTATGCAAAAACGTATCCTAGAAGAATTGAAGAAAGCATTCCGTCCAGAATTCTTGAACCGTGTTGATGAA ACCATTGTGTTCCGTTCGTTAGAAAAAGATGAAATCCATGAAATTGTAAAAATTATGAGTAAATCTGTTGTTAAACGTAT GGAAGAACAAGATATTCAACTTAAAATTACACCGGCAGCTATCGATGTGATTGGCGAAGCCGGGTTTGATCCGGAATATG GGGCTCGACCGATTCGCCGTGCCTTGCAAAAAGAAATTGAAGATCGCTTAAGTGAAGCGTTGCTATCTGGAGAAATTTAT TTCGGTAGTCGTGTCACGATTGGTGCTTCAAAGGGCAAGATTACCTTGAATGTAAAAGAGCCAAGGAAAGAACAAACATT GCAAGAAGTATAG Protein sequence : MDELFTQRAKEVLQIAQEEAKRFKHQTVGSEHVLLALLIEPNGIAGKTLREMNVNENDIREEIEHLTGYGTMTSYPVSGY LPYSPRARQIFAYAGDEAKRLGSSQVGTEHLLLGLLRDEEILASRIMLNLGLSLAKMRQLLKKKMGVNQNKSANGANRRR PAQGRQQQAQEGTPTLDSLARDLTKLAREKRLDPVVGRDKEVKRLIQILSRRTKNNPALVGEPGVGKTAIAEGLAQKINN GEVPQDMQSKRLMMLDIGALVAGTKYRGEFEDRMKKIIDEIYQDGQIILFIDELHTLIGAGGAEGAIDASNILKPALARG ELQTIGATTSDEYQKYIEKDSALERRFARVQVDEPTPDDAVEILGGLRARYEKHHNVEITDEALRACVQFSVRYINGRQL PDKAIDLMDESAAKVRLDQSDEVSETAVVQDQLLEVTEEKEAAIRNQDFEKAASLRKQEQALNKQLQEVSYKEAKAASGF TDKVTEEDVAAVVSQWTGVPLEQMEKKESQRLLDLEKDLHERVVGQDEAVNAVARSIRRARSGLKDPNRPIGSFMFLGPT GVGKTELAKTLAESMFGEEDALIRLDMSEYMEKYSTSRLIGSPPGYVGYDEGGQLTEKVRSKPYSVILLDEVEKAHPEVF NTLLQVLDDGQLTDSKGRSVDFRNTILIMTSNIGAQEIREETNVGFNVVDVKQDHEAMQKRILEELKKAFRPEFLNRVDE TIVFRSLEKDEIHEIVKIMSKSVVKRMEEQDIQLKITPAAIDVIGEAGFDPEYGARPIRRALQKEIEDRLSEALLSGEIY FGSRVTIGASKGKITLNVKEPRKEQTLQEV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 0.0 | 51 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 7e-97 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpC | YP_004885558.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0079 | Protein | 0.0 | 59 |
| clpC | YP_004885558.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG0080 | Protein | 1e-152 | 50 |
| clpC | YP_004885558.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VFG2084 | Protein | 4e-96 | 42 |
